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OpenAlex Citation Counts

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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

Martinize2 and Vermouth: Unified Framework for Topology Generation
P. Kroon, Fritz Grunewald, Jonathan Barnoud, et al.
(2023)
Open Access | Times Cited: 46

Showing 1-25 of 46 citing articles:

Molecular dynamics simulation of an entire cell
Jan A. Stevens, Fabian Grünewald, P. A. Marco van Tilburg, et al.
Frontiers in Chemistry (2023) Vol. 11
Open Access | Times Cited: 78
Molecular architecture and dynamics of SARS-CoV-2 envelope by integrative modeling
Weria Pezeshkian, Fabian Grünewald, Oleksandr Narykov, et al.
Structure (2023) Vol. 31, Iss. 4, pp. 492-503.e7
Open Access | Times Cited: 36
Pragmatic Coarse-Graining of Proteins: Models and Applications
Luís Borges-Araújo, Ilias Patmanidis, Akhil Pratap Singh, et al.
Journal of Chemical Theory and Computation (2023) Vol. 19, Iss. 20, pp. 7112-7135
Open Access | Times Cited: 36
GōMartini 3: From large conformational changes in proteins to environmental bias corrections
Paulo C. T. Souza, Luís Borges-Araújo, Chris Brasnett, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 13
Insertases scramble lipids: Molecular simulations of MTCH2
Ladislav Bartoš, Anant K. Menon, Robert Vácha
Structure (2024) Vol. 32, Iss. 4, pp. 505-510.e4
Open Access | Times Cited: 12
Martini 3 Coarse-Grained Force Field for Cholesterol
Luís Borges-Araújo, Ana C. Borges-Araújo, Tuğba N. Öztürk, et al.
Journal of Chemical Theory and Computation (2023) Vol. 19, Iss. 20, pp. 7387-7404
Open Access | Times Cited: 30
Multiscale simulations reveal TDP-43 molecular-level interactions driving condensation
Helgi I. Ingólfsson, Azamat Rizuan, Xikun Liu, et al.
Biophysical Journal (2023) Vol. 122, Iss. 22, pp. 4370-4381
Open Access | Times Cited: 19
Elucidating the structure and function of a membrane-active plant protein domain using in silico mutagenesis
Lennie K.Y. Cheung, Sebastian Thallmair, Rickey Y. Yada
Biochimica et Biophysica Acta (BBA) - Biomembranes (2025), pp. 184409-184409
Closed Access
Simulation-based survey of TMEM16 family reveals that robust lipid scrambling requires an open groove
C. Stephens, Niek van Hilten, Lisa Zheng, et al.
(2025)
Open Access
Simulation-based survey of TMEM16 family reveals that robust lipid scrambling requires an open groove
C. Stephens, Niek van Hilten, Lisa Zheng, et al.
(2025)
Open Access
Accurate model and ensemble refinement using cryo-electron microscopy maps and Bayesian inference
Samuel E. Hoff, F. Emil Thomasen, Kresten Lindorff‐Larsen, et al.
PLoS Computational Biology (2024) Vol. 20, Iss. 7, pp. e1012180-e1012180
Open Access | Times Cited: 5
The GōMartini Approach: Revisiting the Concept of Contact Maps and the Modelling of Protein Complexes
Luis Fernando Cofas‐Vargas, Renato de Azevedo Moreira, Simón Poblete, et al.
Acta Physica Polonica A (2024) Vol. 145, Iss. 3, pp. S9-S20
Open Access | Times Cited: 4
Colabind: A Cloud-Based Approach for Prediction of Binding Sites Using Coarse-Grained Simulations with Molecular Probes
Georgy Andreev, Max A. Kovalenko, Marine E. Bozdaganyan, et al.
The Journal of Physical Chemistry B (2024) Vol. 128, Iss. 13, pp. 3211-3219
Closed Access | Times Cited: 3
Identification of inhibitors targeting the energy-coupling factor (ECF) transporters
Eleonora Diamanti, Paulo C. T. Souza, Inda Setyawati, et al.
Communications Biology (2023) Vol. 6, Iss. 1
Open Access | Times Cited: 10
Pathways to a Shiny Future: Building the Foundation for Computational Physical Chemistry and Biophysics in 2050
Denys Biriukov, Robert Vácha
ACS Physical Chemistry Au (2024) Vol. 4, Iss. 4, pp. 302-313
Open Access | Times Cited: 2
Building complex membranes with Martini 3
Tuğba N. Öztürk, Melanie König, Timothy S. Carpenter, et al.
Methods in enzymology on CD-ROM/Methods in enzymology (2024), pp. 237-285
Closed Access | Times Cited: 2
Plant protein–lipid interfaces studied by molecular dynamics simulations
Michaela Neubergerová, Roman Pleskot
Journal of Experimental Botany (2024) Vol. 75, Iss. 17, pp. 5237-5250
Closed Access | Times Cited: 2
Insertases Scramble Lipids: Molecular Simulations of MTCH2
Ladislav Bartoš, Anant K. Menon, Robert Vácha
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access | Times Cited: 7
OLIVES: A Go-like Model for Stabilizing Protein Structure via Hydrogen Bonding Native Contacts in the Martini 3 Coarse-Grained Force Field
Kasper B. Pedersen, Luís Borges-Araújo, Amanda D. Stange, et al.
(2023)
Open Access | Times Cited: 7
Bending of a lipid membrane edge by annexin A5 trimers
Mayank Prakash Pandey, Paulo C. T. Souza, Weria Pezeshkian, et al.
Biophysical Journal (2024) Vol. 123, Iss. 8, pp. 1006-1014
Open Access | Times Cited: 1
Dynamics and Activation of Membrane-Bound B Cell Receptor Assembly
N. Hung, Mingfei Zhao, S. Munir Alam, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Closed Access | Times Cited: 1
Dynamics of chromosome organization in a minimal bacterial cell
Benjamin R. Gilbert, Zane R. Thornburg, Troy A. Brier, et al.
Frontiers in Cell and Developmental Biology (2023) Vol. 11
Open Access | Times Cited: 5
Hybrid lipid-block copolymer membranes enable stable reconstitution of a wide range of nanopores and robust sampling of serum
Edo Vreeker, Fabian Grünewald, Nieck Jordy van der Heide, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 1
Martini 3 Coarse-Grained Model for the Cofactors Involved in Photosynthesis
Maria Gabriella Chiariello, Rubí Zarmiento-García, ‪Siewert J. Marrink
International Journal of Molecular Sciences (2024) Vol. 25, Iss. 14, pp. 7947-7947
Open Access | Times Cited: 1
AlphaFold 2-based stacking model for protein solubility prediction and its transferability on seed storage proteins
Hyukjin Kwon, Zhenjiao Du, Yonghui Li
International Journal of Biological Macromolecules (2024) Vol. 278, pp. 134601-134601
Closed Access | Times Cited: 1
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