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OpenAlex Citation Counts

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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

How accurately can one predict drug binding modes using AlphaFold models?
Masha Karelina, Joseph J. Noh, Ron O. Dror
eLife (2023) Vol. 12
Open Access | Times Cited: 38

Showing 1-25 of 38 citing articles:

The Art and Science of Molecular Docking
Joseph M. Paggi, Ayush Pandit, Ron O. Dror
Annual Review of Biochemistry (2024) Vol. 93, Iss. 1, pp. 389-410
Closed Access | Times Cited: 51
Structure prediction of protein-ligand complexes from sequence information with Umol
Patrick Bryant, Atharva Kelkar, Andrea Guljas, et al.
Nature Communications (2024) Vol. 15, Iss. 1
Open Access | Times Cited: 23
The power and pitfalls of AlphaFold2 for structure prediction beyond rigid globular proteins
Vinayak Agarwal, Andrew C. McShan
Nature Chemical Biology (2024) Vol. 20, Iss. 8, pp. 950-959
Closed Access | Times Cited: 22
Overview of AlphaFold2 and breakthroughs in overcoming its limitations
Lei Wang, Zehua Wen, Shiwei Liu, et al.
Computers in Biology and Medicine (2024) Vol. 176, pp. 108620-108620
Closed Access | Times Cited: 10
Structure-based virtual screening of vast chemical space as a starting point for drug discovery
Jens Carlsson, Andreas Luttens
Current Opinion in Structural Biology (2024) Vol. 87, pp. 102829-102829
Open Access | Times Cited: 10
Comparative Structure-Based Virtual Screening Utilizing Optimized AlphaFold Model Identifies Selective HDAC11 Inhibitor
Fady Baselious, Sebastian Hilscher, Dina Robaa, et al.
International Journal of Molecular Sciences (2024) Vol. 25, Iss. 2, pp. 1358-1358
Open Access | Times Cited: 8
Semiconducting polymer dots for multifunctional integrated nanomedicine carriers
Ze Zhang, Chenhao Yu, Yuyang Wu, et al.
Materials Today Bio (2024) Vol. 26, pp. 101028-101028
Open Access | Times Cited: 8
Artificial intelligence alphafold model for molecular biology and drug discovery: a machine-learning-driven informatics investigation
Song‐Bin Guo, Meng Yuan, Liteng Lin, et al.
Molecular Cancer (2024) Vol. 23, Iss. 1
Open Access | Times Cited: 8
AlphaFold touted as next big thing for drug discovery — but is it?
Carrie Arnold
Nature (2023) Vol. 622, Iss. 7981, pp. 15-17
Closed Access | Times Cited: 15
DiffBindFR: an SE(3) equivariant network for flexible protein–ligand docking
Jintao Zhu, Zhonghui Gu, Jianfeng Pei, et al.
Chemical Science (2024) Vol. 15, Iss. 21, pp. 7926-7942
Open Access | Times Cited: 5
AlphaFold and Protein Folding: Not Dead Yet! The Frontier Is Conformational Ensembles
Gregory R. Bowman
Annual Review of Biomedical Data Science (2024) Vol. 7, Iss. 1, pp. 51-57
Closed Access | Times Cited: 5
From GPUs to AI and quantum: three waves of acceleration in bioinformatics
Bertil Schmidt, Andreas Hildebrandt
Drug Discovery Today (2024) Vol. 29, Iss. 6, pp. 103990-103990
Open Access | Times Cited: 5
AlphaFold and what is next: bridging functional, systems and structural biology
Kacper Szczepski, Łukasz Jaremko
Expert Review of Proteomics (2025)
Closed Access
Predicting substrates for orphan solute carrier proteins using multi-omics datasets
Yimo Zhang, Simon Newstead, Peter Sarkies
BMC Genomics (2025) Vol. 26, Iss. 1
Open Access
AlphaFold as a Prior: Experimental Structure Determination Conditioned on a Pretrained Neural Network
Alisia Fadini, Minhuan Li, Airlie J. McCoy, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2025)
Open Access
AmIActive (AIA): A Large-scale QSAR Based Target Fishing and Polypharmacology Predictive Web Tool
Luis Felipe de Morais Melo, Luciano Pereira de Oliveira Filho, Uilames de Assis Ferreira, et al.
Journal of Molecular Biology (2025), pp. 169090-169090
Closed Access
AlphaFold2 structures template ligand discovery
Jiankun Lyu, Nicholas J. Kapolka, Ryan H. Gumpper, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access | Times Cited: 14
Computational methods for unlocking the secrets of potassium channels: Structure, mechanism, and drug design
Lingling Wang, Qianqian Zhang, Henry H.Y. Tong, et al.
Wiley Interdisciplinary Reviews Computational Molecular Science (2024) Vol. 14, Iss. 1
Closed Access | Times Cited: 4
Artificial intelligence for drug repurposing against infectious diseases
Anuradha Singh
Artificial Intelligence Chemistry (2024) Vol. 2, Iss. 2, pp. 100071-100071
Open Access | Times Cited: 4
AlphaFold accelerated discovery of psychotropic agonists targeting the trace amine–associated receptor 1
Alejandro Díaz‐Holguín, Marcus Saarinen, Duc Duy Vo, et al.
Science Advances (2024) Vol. 10, Iss. 32
Open Access | Times Cited: 4
Reliability of AlphaFold2 Models in Virtual Drug Screening: A Focus on Selected Class A GPCRs
Nada K. Alhumaid, Essam A. Tawfik
International Journal of Molecular Sciences (2024) Vol. 25, Iss. 18, pp. 10139-10139
Open Access | Times Cited: 3
Making Use of Averaging Methods in MODELLER for Protein Structure Prediction
Serena Rosignoli, Elisa Lustrino, Iris Di Silverio, et al.
International Journal of Molecular Sciences (2024) Vol. 25, Iss. 3, pp. 1731-1731
Open Access | Times Cited: 1
Integrating Large-Scale Protein Structure Prediction into Human Genetics Research
Miguel Marrero, Jürgen Jänes, Delora Baptista, et al.
Annual Review of Genomics and Human Genetics (2024) Vol. 25, Iss. 1, pp. 123-140
Closed Access | Times Cited: 1
GTExome: Modeling commonly expressed missense mutations in the human genome
Jill A. Hoffman, Henry S.I. Tan, Clara Sandoval-Cooper, et al.
PLoS ONE (2024) Vol. 19, Iss. 5, pp. e0303604-e0303604
Open Access | Times Cited: 1
Molecular dynamics simulations reveal differences in the conformational stability of FtsZs derived from Staphylococcus aureus and Bacillus subtilis
Taichi Takasawa, Takashi Matsui, Go Watanabe, et al.
Scientific Reports (2024) Vol. 14, Iss. 1
Open Access | Times Cited: 1
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