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OpenAlex Citation Counts

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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

DeepNGlyPred: A Deep Neural Network-Based Approach for Human N-Linked Glycosylation Site Prediction
Subash C. Pakhrin, Kiyoko F. Aoki‐Kinoshita, Doina Caragea, et al.
Molecules (2021) Vol. 26, Iss. 23, pp. 7314-7314
Open Access | Times Cited: 28

Showing 1-25 of 28 citing articles:

Glycoinformatics in the Artificial Intelligence Era
Daniel Bojar, Frédérique Lisacek
Chemical Reviews (2022) Vol. 122, Iss. 20, pp. 15971-15988
Open Access | Times Cited: 48
LMNglyPred: prediction of human N-linked glycosylation sites using embeddings from a pre-trained protein language model
Subash C. Pakhrin, Suresh Pokharel, Kiyoko F. Aoki‐Kinoshita, et al.
Glycobiology (2023) Vol. 33, Iss. 5, pp. 411-422
Closed Access | Times Cited: 23
Combining machine learning with structure-based protein design to predict and engineer post-translational modifications of proteins
Moritz Ertelt, Vikram Khipple Mulligan, Jack B. Maguire, et al.
PLoS Computational Biology (2024) Vol. 20, Iss. 3, pp. e1011939-e1011939
Open Access | Times Cited: 11
LMPhosSite: A Deep Learning-Based Approach for General Protein Phosphorylation Site Prediction Using Embeddings from the Local Window Sequence and Pretrained Protein Language Model
Subash C. Pakhrin, Suresh Pokharel, Pawel Pratyush, et al.
Journal of Proteome Research (2023) Vol. 22, Iss. 8, pp. 2548-2557
Closed Access | Times Cited: 20
Artificial intelligence in the analysis of glycosylation data
Haining Li, Austin W.T. Chiang, Nathan E. Lewis
Biotechnology Advances (2022) Vol. 60, pp. 108008-108008
Open Access | Times Cited: 24
EMNGly: predicting N-linked glycosylation sites using the language models for feature extraction
Xiaoyang Hou, Yu Wang, Dongbo Bu, et al.
Bioinformatics (2023) Vol. 39, Iss. 11
Open Access | Times Cited: 14
SumoPred-PLM: human SUMOylation and SUMO2/3 sites Prediction using Pre-trained Protein Language Model
Andrew Vargas Palacios, Pujan Acharya, Anthony S. Peidl, et al.
NAR Genomics and Bioinformatics (2024) Vol. 6, Iss. 1
Open Access | Times Cited: 5
Challenges and Insights in Absolute Quantification of Recombinant Therapeutic Antibodies by Mass Spectrometry: An Introductory Review
Sarah Döring, Michael G. Weller, Yvonne Reinders, et al.
Antibodies (2025) Vol. 14, Iss. 1, pp. 3-3
Open Access
Insights on post-translational modifications in fatty liver and fibrosis progression
C. Nageswara Raju, Kavitha Sankaranarayanan
Biochimica et Biophysica Acta (BBA) - Molecular Basis of Disease (2025) Vol. 1871, Iss. 3, pp. 167659-167659
Closed Access
Immunoglobulin G N-glycan Biomarkers for Autoimmune Diseases: Current State and a Glycoinformatics Perspective
Konstantinos Flevaris, Cleo Kontoravdi
International Journal of Molecular Sciences (2022) Vol. 23, Iss. 9, pp. 5180-5180
Open Access | Times Cited: 20
Artificial intelligence and machine learning applications for cultured meat
Michael E. Todhunter, Sheikh Jubair, Ruchika Verma, et al.
Frontiers in Artificial Intelligence (2024) Vol. 7
Open Access | Times Cited: 3
O-Fucosylation of BMP1 promotes endometrial decidualization by activating BMP/Smad signaling pathway
Yang Yu, Juan Liang, Siyi Chen, et al.
Biology of Reproduction (2023) Vol. 109, Iss. 2, pp. 172-183
Closed Access | Times Cited: 5
A quest for cytosolic sequons and their functions
Manthan Desai, Syed Rafid Chowdhury, Bingyun Sun
Scientific Reports (2024) Vol. 14, Iss. 1
Open Access | Times Cited: 1
N-GlycoPred: A hybrid deep learning model for accurate identification of N-glycosylation sites
Fengzhu Hu, Jie Gao, Jia Zheng, et al.
Methods (2024) Vol. 227, pp. 48-57
Closed Access | Times Cited: 1
Sitetack: A Deep Learning Model that Improves PTM Prediction by Using Known PTMs
Clair S. Gutierrez, Alia A. Kassim, Benjamin D. Gutierrez, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 1
Decoding glycosylation potential from protein structure across human glycoproteins with a multi-view recurrent neural network
Benjamin P. Kellman, Julien Mariethoz, Yujie Zhang, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 1
Sitetack: A deep learning model that improves PTM prediction by using known PTMs
Clair S. Gutierrez, Alia A. Kassim, Benjamin D. Gutierrez, et al.
Bioinformatics (2024) Vol. 40, Iss. 11
Open Access | Times Cited: 1
Prediction of human O-linked glycosylation sites using stacked generalization and embeddings from pre-trained protein language model
Subash Chandra Pakhrin, Neha Chauhan, Salman Khan, et al.
Bioinformatics (2024) Vol. 40, Iss. 11
Open Access | Times Cited: 1
Evolutionary conservation of sequence motifs at sites of protein modification
Shuang Li, Henrik G Dohlman
Journal of Biological Chemistry (2023) Vol. 299, Iss. 5, pp. 104617-104617
Open Access | Times Cited: 3
Human O-linked Glycosylation Site Prediction Using Pretrained Protein Language Model
Subash Chandra Pakhrin, Neha Chauhan, Salman Khan, et al.
Research Square (Research Square) (2023)
Open Access | Times Cited: 2
CoNglyPred: Accurate Prediction of N‐Linked Glycosylation Sites Using ESM‐2 and Structural Features With Graph Network and Co‐Attention
Hongmei Wang, Long Zhao, Ziyuan Yu, et al.
PROTEOMICS (2024)
Closed Access
Positions of cysteine residues reveal local clusters and hidden relationships to Sequons and Transmembrane domains in Human proteins
Manthan Desai, Bingyun Sun
Scientific Reports (2024) Vol. 14, Iss. 1
Open Access
Linear and neural network models for predicting N-glycosylation in Chinese Hamster Ovary cells based on B4GALT levels
Pedro Seber, Richard D. Braatz
Computers & Chemical Engineering (2024), pp. 108937-108937
Open Access
Protein Post-Translational Modifications
Shuchi Sharma
Elsevier eBooks (2024)
Closed Access
Discovery of Carbonic Anhydrase 9 as a Novel CLEC2 Ligand in a Cellular Interactome Screen
Sebastian Hoffmann, Benedict‐Tilman Berger, Lorna Lucas, et al.
Cells (2024) Vol. 13, Iss. 24, pp. 2083-2083
Open Access
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