Open Access Helper

OpenAlex Citation Counts

OpenAlex Citations Logo

OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

ECMpy, a Simplified Workflow for Constructing Enzymatic Constrained Metabolic Network Model
Zhitao Mao, Xin Zhao, Xue Yang, et al.
Biomolecules (2022) Vol. 12, Iss. 1, pp. 65-65
Open Access | Times Cited: 29

Showing 1-25 of 29 citing articles:

Reconstruction, simulation and analysis of enzyme-constrained metabolic models using GECKO Toolbox 3.0
Yu Chen, Johan Gustafsson, Albert Tafur Rangel, et al.
Nature Protocols (2024) Vol. 19, Iss. 3, pp. 629-667
Closed Access | Times Cited: 22
Genome-scale metabolic network models for industrial microorganisms metabolic engineering: Current advances and future prospects
Zhijin Gong, Jiayao Chen, Xinyu Jiao, et al.
Biotechnology Advances (2024) Vol. 72, pp. 108319-108319
Closed Access | Times Cited: 9
Protein constraints in genome‐scale metabolic models: Data integration, parameter estimation, and prediction of metabolic phenotypes
Maurício Alexander de Moura Ferreira, Wendel Batista da Silveira, Zoran Nikoloski
Biotechnology and Bioengineering (2024) Vol. 121, Iss. 3, pp. 915-930
Open Access | Times Cited: 7
ECMpy 2.0: A Python package for automated construction and analysis of enzyme-constrained models
Zhitao Mao, Jinhui Niu, Jianxiao Zhao, et al.
Synthetic and Systems Biotechnology (2024) Vol. 9, Iss. 3, pp. 494-502
Open Access | Times Cited: 7
ecBSU1: A Genome-Scale Enzyme-Constrained Model of Bacillus subtilis Based on the ECMpy Workflow
Ke Wu, Zhitao Mao, Yufeng Mao, et al.
Microorganisms (2023) Vol. 11, Iss. 1, pp. 178-178
Open Access | Times Cited: 15
Advances in constraint-based models: methods for improved predictive power based on resource allocation constraints
Eduard J. Kerkhoven
Current Opinion in Microbiology (2022) Vol. 68, pp. 102168-102168
Open Access | Times Cited: 20
Construction and Analysis of an Enzyme-Constrained Metabolic Model of Corynebacterium glutamicum
Jinhui Niu, Zhitao Mao, Yufeng Mao, et al.
Biomolecules (2022) Vol. 12, Iss. 10, pp. 1499-1499
Open Access | Times Cited: 20
Constraint-Based Reconstruction and Analyses of Metabolic Models: Open-Source Python Tools and Applications to Cancer
Raymond T. Ng, J. Lee, Priyanka Baloni, et al.
Frontiers in Oncology (2022) Vol. 12
Open Access | Times Cited: 18
Model-driven insights into the effects of temperature on metabolism
Philipp Wendering, Zoran Nikoloski
Biotechnology Advances (2023) Vol. 67, pp. 108203-108203
Open Access | Times Cited: 10
Enzyme-constrained metabolic model and in silico metabolic engineering of Clostridium ljungdahlii for the development of sustainable production processes
Antonio Caivano, Wouter van Winden, Giuliano Dragone, et al.
Computational and Structural Biotechnology Journal (2023) Vol. 21, pp. 4634-4646
Open Access | Times Cited: 7
Optimizing VLP production in gene therapy: Opportunities and challenges for in silico modeling
Leopold Zehetner, Diana Széliová, Barbara Kraus, et al.
Biotechnology Journal (2023) Vol. 18, Iss. 7
Open Access | Times Cited: 6
Current State, Challenges, and Opportunities in Genome-Scale Resource Allocation Models: A Mathematical Perspective
Wheaton L. Schroeder, Patrick F. Suthers, T. Willis, et al.
Metabolites (2024) Vol. 14, Iss. 7, pp. 365-365
Open Access | Times Cited: 1
Precise metabolic modeling in post-omics era: accomplishments and perspectives
Y. Kong, Haiqin Chen, Xinlei Huang, et al.
Critical Reviews in Biotechnology (2024), pp. 1-19
Closed Access | Times Cited: 1
In silico cell factory design driven by comprehensive genome-scale metabolic models: development and challenges
Jiangong Lu, Xinyu Bi, Yanfeng Liu, et al.
Systems Microbiology and Biomanufacturing (2022) Vol. 3, Iss. 2, pp. 207-222
Open Access | Times Cited: 9
Data-Driven Synthetic Cell Factories Development for Industrial Biomanufacturing
Zhenkun Shi, Pi Liu, Xiaoping Liao, et al.
BioDesign Research (2022) Vol. 2022
Open Access | Times Cited: 8
Co‐Cultivated Enzyme Constraint Metabolic Network Model for Rational Guidance in Constructing Synthetic Consortia to Achieve Optimal Pathway Allocation Prediction
Boyuan Xue, Yu Liu, Chen Yang, et al.
Advanced Science (2023) Vol. 11, Iss. 9
Open Access | Times Cited: 3
Improving pathway prediction accuracy of constraints-based metabolic network models by treating enzymes as microcompartments
Xue Yang, Zhitao Mao, Jianfeng Huang, et al.
Synthetic and Systems Biotechnology (2023) Vol. 8, Iss. 4, pp. 597-605
Open Access | Times Cited: 2
Simultaneous application of enzyme and thermodynamic constraints to metabolic models using an updated Python implementation of GECKO
Jorge Carrasco Muriel, Christopher P. Long, Nikolaus Sonnenschein
Microbiology Spectrum (2023) Vol. 11, Iss. 6
Open Access | Times Cited: 2
Construction of an enzyme-constrained metabolic network model for Myceliophthora thermophila using machine learning-based kcat data
Yutao Wang, Zhitao Mao, Jiacheng Dong, et al.
Research Square (Research Square) (2024)
Open Access
Omics data analysis reveals the system-level constraint on cellular amino acid composition
Yuanyuan Huang, Zhitao Mao, Yue Zhang, et al.
Synthetic and Systems Biotechnology (2024) Vol. 9, Iss. 2, pp. 304-311
Open Access
DeepSub: Utilizing Deep Learning for Predicting the Number of Subunits in Homo-Oligomeric Protein Complexes
Rui Deng, Ke Wu, Jiawei Lin, et al.
International Journal of Molecular Sciences (2024) Vol. 25, Iss. 9, pp. 4803-4803
Open Access
Construction of an enzyme-constrained metabolic network model for Myceliophthora thermophila using machine learning-based kcat data
Yutao Wang, Zhitao Mao, Jiacheng Dong, et al.
Microbial Cell Factories (2024) Vol. 23, Iss. 1
Open Access
Algorithm of spatial–temporal simulation for environment–strain interactions in strain–strain consortia based on resource competition mechanism
Yang Chen, Boyuan Xue, Qianqian Yuan, et al.
Computational and Structural Biotechnology Journal (2024) Vol. 23, pp. 2861-2871
Open Access
Model-driven evaluation of microbial physiology: insights from protein allocation
Maurício Alexander de Moura Ferreira
(2024)
Open Access
Upgrading a cyanobacterial genome-scale model by inclusion of enzymatic constraints
Fraser Andrews, Nigel S. Scrutton, Jean‐Marc Schwartz
Algal Research (2024) Vol. 81, pp. 103584-103584
Open Access
Page 1 - Next Page

Scroll to top