Open Access Helper

OpenAlex Citation Counts

OpenAlex Citations Logo

OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

Biasing AlphaFold2 to predict GPCRs and kinases with user-defined functional or structural properties
Davide Sala, Peter W. Hildebrand, Jens Meiler
Frontiers in Molecular Biosciences (2023) Vol. 10
Open Access | Times Cited: 56

Showing 1-25 of 56 citing articles:

Modeling conformational states of proteins with AlphaFold
Davide Sala, Felipe Engelberger, Hassane S. Mchaourab, et al.
Current Opinion in Structural Biology (2023) Vol. 81, pp. 102645-102645
Open Access | Times Cited: 108
The power and pitfalls of AlphaFold2 for structure prediction beyond rigid globular proteins
Vinayak Agarwal, Andrew C. McShan
Nature Chemical Biology (2024) Vol. 20, Iss. 8, pp. 950-959
Closed Access | Times Cited: 27
Computational drug development for membrane protein targets
Haijian Li, Xiaolin Sun, Wenqiang Cui, et al.
Nature Biotechnology (2024) Vol. 42, Iss. 2, pp. 229-242
Closed Access | Times Cited: 16
AlphaFold2 Predicts Whether Proteins Interact Amidst Confounding Structural Compatibility
Juliette Martin
Journal of Chemical Information and Modeling (2024) Vol. 64, Iss. 5, pp. 1473-1480
Open Access | Times Cited: 8
From byte to bench to bedside: molecular dynamics simulations and drug discovery
M.W. Ahmed, Alex M. Maldonado, Jacob D. Durrant
BMC Biology (2023) Vol. 21, Iss. 1
Open Access | Times Cited: 21
Representing structures of the multiple conformational states of proteins
Theresa A. Ramelot, Roberto Tejero, G.T. Montelione
Current Opinion in Structural Biology (2023) Vol. 83, pp. 102703-102703
Open Access | Times Cited: 18
Investigating the conformational landscape of AlphaFold2-predicted protein kinase structures
Carmen Al-Masri, Francesco Trozzi, Shu-Hang Lin, et al.
Bioinformatics Advances (2023) Vol. 3, Iss. 1
Open Access | Times Cited: 17
Identification of flavor peptides based on virtual screening and molecular docking from Hypsizygus marmoreuss
Wenting Wang, Hongbo Li, Zhenbin Liu, et al.
Food Chemistry (2024) Vol. 448, pp. 139071-139071
Closed Access | Times Cited: 7
Predicting Functional Conformational Ensembles and Binding Mechanisms of Convergent Evolution for SARS-CoV-2 Spike Omicron Variants Using AlphaFold2 Sequence Scanning Adaptations and Molecular Dynamics Simulations
Nishank Raisinghani, Mohammed Alshahrani, Grace Gupta, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 7
Integration of a Randomized Sequence Scanning Approach in AlphaFold2 and Local Frustration Profiling of Conformational States Enable Interpretable Atomistic Characterization of Conformational Ensembles and Detection of Hidden Allosteric States in the ABL1 Protein Kinase
Nishank Raisinghani, Mohammed Alshahrani, Grace Gupta, et al.
Journal of Chemical Theory and Computation (2024) Vol. 20, Iss. 12, pp. 5317-5336
Closed Access | Times Cited: 6
A comprehensive exploration of the druggable conformational space of protein kinases using AI-predicted structures
Noah B. Herrington, Yan Chak Li, David Stein, et al.
PLoS Computational Biology (2024) Vol. 20, Iss. 7, pp. e1012302-e1012302
Open Access | Times Cited: 6
Breaking the conformational ensemble barrier: Ensemble structure modeling challenges in CASP15
Andriy Kryshtafovych, G.T. Montelione, Daniel J. Rigden, et al.
Proteins Structure Function and Bioinformatics (2023) Vol. 91, Iss. 12, pp. 1903-1911
Open Access | Times Cited: 13
Computational Workflow for Refining AlphaFold Models in Drug Design Using Kinetic and Thermodynamic Binding Calculations: A Case Study for the Unresolved Inactive Human Adenosine A3 Receptor
Margarita Stampelou, Graham Ladds, Antonios Kolocouris
The Journal of Physical Chemistry B (2024) Vol. 128, Iss. 4, pp. 914-936
Closed Access | Times Cited: 5
Interpretable Atomistic Prediction and Functional Analysis of Conformational Ensembles and Allosteric States in Protein Kinases Using AlphaFold2 Adaptation with Randomized Sequence Scanning and Local Frustration Profiling
Nishank Raisinghani, Mohammed Alshahrani, Grace Gupta, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 5
Exploring Conformational Landscapes and Binding Mechanisms of Convergent Evolution for the SARS-CoV-2 Spike Omicron Variant Complexes with the ACE2 Receptor Using AlphaFold2-Based Structural Ensembles and Molecular Dynamics Simulations
Nishank Raisinghani, Mohammed Alshahrani, Grace Gupta, et al.
Physical Chemistry Chemical Physics (2024) Vol. 26, Iss. 25, pp. 17720-17744
Closed Access | Times Cited: 5
Ligand-Induced Biased Activation of GPCRs: Recent Advances and New Directions from In Silico Approaches
Shaima Hashem, Alexis Dougha, Pierre Tufféry
Molecules (2025) Vol. 30, Iss. 5, pp. 1047-1047
Open Access
Can Deep Learning Blind Docking Methods be Used to Predict Allosteric Compounds?
Eric A. Chen, Yingkai Zhang
Journal of Chemical Information and Modeling (2025)
Open Access
Targeting in silico GPCR conformations with ultra-large library screening for hit discovery
Davide Sala, Hossein Batebi, Kaitlyn V. Ledwitch, et al.
Trends in Pharmacological Sciences (2023) Vol. 44, Iss. 3, pp. 150-161
Open Access | Times Cited: 12
Is the Functional Response of a Receptor Determined by the Thermodynamics of Ligand Binding?
Martin Vögele, Bin W. Zhang, Jonas Kaindl, et al.
Journal of Chemical Theory and Computation (2023) Vol. 19, Iss. 22, pp. 8414-8422
Closed Access | Times Cited: 12
Accelerated Molecular Dynamics and AlphaFold Uncover a Missing Conformational State of Transporter Protein OxlT
Jun Ohnuki, Titouan Jaunet‐Lahary, Atsuko Yamashita, et al.
The Journal of Physical Chemistry Letters (2024) Vol. 15, Iss. 3, pp. 725-732
Open Access | Times Cited: 4
Empowering AlphaFold2 for protein conformation selective drug discovery with AlphaFold2-RAVE
Xinyu Gu, Akashnathan Aranganathan, Pratyush Tiwary
eLife (2024) Vol. 13
Open Access | Times Cited: 4
Empowering AlphaFold2 for protein conformation selective drug discovery with AlphaFold2-RAVE
Xinyu Gu, Akashnathan Aranganathan, Pratyush Tiwary
(2024)
Open Access | Times Cited: 4
Rosetta Energy Analysis of AlphaFold2 models: Point Mutations and Conformational Ensembles
Richard A. Stein, Hassane S. Mchaourab
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access | Times Cited: 9
Click, Compute, Create: A Review of Web‐based Tools for Enzyme Engineering
Adrian Tripp, Markus Braun, Florian Wieser, et al.
ChemBioChem (2024)
Open Access | Times Cited: 3
Predicting Mutation-Induced Allosteric Changes in Structures and Conformational Ensembles of the ABL Kinase Using AlphaFold2 Adaptations with Alanine Sequence Scanning
Nishank Raisinghani, Mohammed Alshahrani, Grace Gupta, et al.
International Journal of Molecular Sciences (2024) Vol. 25, Iss. 18, pp. 10082-10082
Open Access | Times Cited: 3
Page 1 - Next Page

Scroll to top