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OpenAlex Citation Counts

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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

Vitessce: integrative visualization of multimodal and spatially-resolved single-cell data
Mark S. Keller, Ilan Gold, Chuck McCallum, et al.
(2021)
Open Access | Times Cited: 35

Showing 1-25 of 35 citing articles:

The dawn of spatial omics
Dario Bressan, Giorgia Battistoni, Gregory J. Hannon
Science (2023) Vol. 381, Iss. 6657
Open Access | Times Cited: 235
The scverse project provides a computational ecosystem for single-cell omics data analysis
Isaac Virshup, Danila Bredikhin, Lukas Heumos, et al.
Nature Biotechnology (2023) Vol. 41, Iss. 5, pp. 604-606
Closed Access | Times Cited: 143
An end-to-end workflow for multiplexed image processing and analysis
Jonas Windhager, Vito Riccardo Tomaso Zanotelli, Daniel Schulz, et al.
Nature Protocols (2023) Vol. 18, Iss. 11, pp. 3565-3613
Open Access | Times Cited: 115
OME-Zarr: a cloud-optimized bioimaging file format with international community support
Josh Moore, Daniela Basurto-Lozada, Sébastien Besson, et al.
Histochemistry and Cell Biology (2023) Vol. 160, Iss. 3, pp. 223-251
Open Access | Times Cited: 62
SpatialData: an open and universal data framework for spatial omics
Luca Marconato, Giovanni Palla, Kevin A. Yamauchi, et al.
Nature Methods (2024)
Open Access | Times Cited: 51
Spatial transcriptomics in health and disease
Sanjay Jain, Michael T. Eadon
Nature Reviews Nephrology (2024) Vol. 20, Iss. 10, pp. 659-671
Closed Access | Times Cited: 20
Viv: multiscale visualization of high-resolution multiplexed bioimaging data on the web
Trevor Manz, Ilan Gold, Nathan Heath Patterson, et al.
Nature Methods (2022) Vol. 19, Iss. 5, pp. 515-516
Open Access | Times Cited: 50
Organ Mapping Antibody Panels: a community resource for standardized multiplexed tissue imaging
Ellen M. Quardokus, Diane C. Saunders, Elizabeth McDonough, et al.
Nature Methods (2023) Vol. 20, Iss. 8, pp. 1174-1178
Open Access | Times Cited: 25
SpatialData: an open and universal data framework for spatial omics
Luca Marconato, Giovanni Palla, Kevin A. Yamauchi, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access | Times Cited: 23
WebAtlas pipeline for integrated single-cell and spatial transcriptomic data
Tong Li, Dave Horsfall, Daniela Basurto-Lozada, et al.
Nature Methods (2024)
Closed Access | Times Cited: 11
Human BioMolecular Atlas Program (HuBMAP): 3D Human Reference Atlas Construction and Usage
Katy Börner, Philip D. Blood, Jonathan C. Silverstein, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 6
OME-Zarr: a cloud-optimized bioimaging file format with international community support
Josh Moore, Daniela Basurto-Lozada, Sébastien Besson, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access | Times Cited: 11
WebAtlas pipeline for integrated single cell and spatial transcriptomic data
Tong Li, Dave Horsfall, Daniela Basurto-Lozada, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Closed Access | Times Cited: 9
A perspective on FAIR quality control in multiplexed imaging data processing
Wouter-Michiel Vierdag, Sinem K. Saka
Frontiers in Bioinformatics (2024) Vol. 4
Open Access | Times Cited: 2
Any notebook served: authoring and sharing reusable interactive widgets
Trevor Manz, Nils Gehlenborg, Nezar Abdennur
(2024)
Open Access | Times Cited: 2
GeneRanger and TargetRanger: processed gene and protein expression levels across cells and tissues for target discovery
Giacomo B. Marino, Michael Ngai, Daniel Clarke, et al.
Nucleic Acids Research (2023) Vol. 51, Iss. W1, pp. W213-W224
Open Access | Times Cited: 6
SPEX: A modular end-to-end analytics tool for spatially resolved omics of tissues
Xiaoli Li, Ximo Pechuan-Jorge, Tyler Risom, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2022)
Open Access | Times Cited: 8
Integrative Co-Registration of Elemental Imaging and Histopathology for Enhanced Spatial Multimodal Analysis of Tissue Sections through TRACE
Yunrui Lu, Ramsey Steiner, Serin Han, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 1
Multiplexed 3D Analysis of Immune States and Niches in Human Tissue
Clarence Yapp, Ajit J. Nirmal, Felix Zhou, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access | Times Cited: 4
VoltRon: A Spatial Omics Analysis Platform for Multi-Resolution and Multi-omics Integration using Image Registration
Artür Manukyan, Ella Bahry, Emanuel Wyler, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access | Times Cited: 4
Image-based representation of massive spatial transcriptomics datasets
Stephan Preibisch, Michael Innerberger, Daniel León-Periñán, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2021)
Closed Access | Times Cited: 10
Viv: Multiscale Visualization of High-Resolution Multiplexed Bioimaging Data on the Web
Trevor Manz, Ilan Gold, Nathan Heath Patterson, et al.
(2020)
Open Access | Times Cited: 10
TissUUmaps 3: Improvements in interactive visualization, exploration, and quality assessment of large-scale spatial omics data
Nicolas Pielawski, Axel Andersson, Christophe Avenel, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2022)
Open Access | Times Cited: 7
A Web-based Software Resource for Interactive Analysis of Multiplex Tissue Imaging Datasets
Allison Creason, Cameron Watson, Qiang Gu, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2022)
Open Access | Times Cited: 4
Aardvark: Composite Visualizations of Trees, Time-Series, and Images
Devin Lange, Robert L. Judson‐Torres, Thomas A. Zangle, et al.
(2024)
Open Access
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