Open Access Helper

OpenAlex Citation Counts

OpenAlex Citations Logo

OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

anndata: Access and store annotated data matrices
Isaac Virshup, Sergei Rybakov, Fabian J. Theis, et al.
The Journal of Open Source Software (2024) Vol. 9, Iss. 101, pp. 4371-4371
Open Access | Times Cited: 30

Showing 1-25 of 30 citing articles:

Mapping cells through time and space with moscot
Dominik Klein, Giovanni Palla, Marius Lange, et al.
Nature (2025)
Open Access | Times Cited: 3
A multi-omic atlas of human embryonic skeletal development
Ken To, Lijiang Fei, J. Patrick Pett, et al.
Nature (2024) Vol. 635, Iss. 8039, pp. 657-667
Open Access | Times Cited: 14
Inferring single-cell and spatial microRNA activity from transcriptomics data
Efrat Herbst, Yael Mandel‐Gutfreund, Zohar Yakhini, et al.
Communications Biology (2025) Vol. 8, Iss. 1
Open Access | Times Cited: 1
Mosquito Cell Atlas: A single-nucleus transcriptomic atlas of the adultAedes aegyptimosquito
Olivia V. Goldman, Alexandra E. DeFoe, Yanyan Qi, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2025)
Open Access | Times Cited: 1
Single-cell and spatial genomic landscape of non-small cell lung cancer brain metastases
Andrea Califano, Lindsay Caprio, Amit Dipak Amin, et al.
Nature Medicine (2025)
Closed Access | Times Cited: 1
Consensus prediction of cell type labels in single-cell data with popV
Can Ergen, Galen Xing, Chenling Xu, et al.
Nature Genetics (2024)
Open Access | Times Cited: 6
Interspecies Organoids Reveal Human-Specific Molecular Features of Dopaminergic Neuron Development and Vulnerability
Sara Nolbrant, Jenelle L. Wallace, Jingwen Ding, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 4
Learning and teaching biological data science in the Bioconductor community
Jenny Drnevich, Frederick J. Tan, Fabrício Almeida-Silva, et al.
PLoS Computational Biology (2025) Vol. 21, Iss. 4, pp. e1012925-e1012925
Open Access
Galaxy as a gateway to bioinformatics: Multi-Interface Galaxy Hands-on Training Suite (MIGHTS) for scRNA-seq
Camila L Goclowski, Julia Jakiela, Tyler Collins, et al.
GigaScience (2025) Vol. 14
Open Access
Combinatorial phenotypic landscape enables bacterial resistance to phage infection
Anika Gupta, Norma M. Morella, Dmitry Sutormin, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2025)
Open Access
Accurate quantification of spliced and unspliced transcripts for single-cell RNA sequencing with tidesurf
Jan Schleicher, Manfred Claassen
bioRxiv (Cold Spring Harbor Laboratory) (2025)
Open Access
Retrotrans-genomics identifies aberrant THE1B endogenous retrovirus fusion transcripts in the pathogenesis of sarcoidosis
Shunsuke Funaguma, Aritoshi Iida, Yoshihiko Saito, et al.
Nature Communications (2025) Vol. 16, Iss. 1
Open Access
CASHeart: A database of single cells chromatin accessibility for the human heart
Qun Jiang, Xiaoyang Chen, Zijing Gao, et al.
Quantitative Biology (2025) Vol. 13, Iss. 2
Open Access
Chronic exposure to glucocorticoids amplifies inhibitory neuron cell fate during human neurodevelopment in organoids
Leander Dony, Anthi C. Krontira, Lea Kaspar, et al.
Science Advances (2025) Vol. 11, Iss. 7
Open Access
geneRNIB: a living benchmark for gene regulatory network inference
Jalil Nourisa, Antoine Passemiers, Marco Stock, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2025)
Open Access
Absence of c-Maf and IL-10 enables type I IFN enhancement of innate responses to LPS in alveolar macrophages
Pamelia N. Lim, Maritza M. Cervantes, Linh K. Pham, et al.
The Journal of Immunology (2025)
Closed Access
Feature selection methods affect the performance of scRNA-seq data integration and querying
Luke Zappia, Sabrina Richter, Ciro Ramírez-Suástegui, et al.
Nature Methods (2025)
Open Access
Quantitative characterization of cell niches in spatially resolved omics data
Sebastian Birk, Irene Bonafonte-Pardàs, Adib Miraki Feriz, et al.
Nature Genetics (2025)
Open Access
Machine learning inference of natural product chemistry across biosynthetic gene cluster types
Martin Larralde, Georg Zeller
bioRxiv (Cold Spring Harbor Laboratory) (2025)
Open Access
Single-cell spatial transcriptomic atlas of the whole mouse brain
Lei Han, Zhen Liu, Zehua Jing, et al.
Neuron (2025)
Closed Access
Analysis of single-cell TCR repertoires and gene expression from multi-modal scRNA-seq data
Christina Plattner, Gregor Sturm, Dietmar Rieder
Methods in cell biology (2025)
Closed Access
CellFlow enables generative single-cell phenotype modeling with flow matching
Leo C. Stein, Jonas Simon Fleck, Daniil Bobrovskiy, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2025)
Open Access
Benchmarking single cell transcriptome matching methods for incremental growth of reference atlases
Joyce Hu, Beverly Peng, Ajith V. Pankajam, et al.
(2025)
Open Access
Gastruloids are competent to specify both cardiac and skeletal muscle lineages
Laurent Argiro, Céline Chevalier, Caroline Choquet, et al.
Nature Communications (2024) Vol. 15, Iss. 1
Open Access | Times Cited: 3
scProAtlas: an atlas of multiplexed single-cell spatial proteomics imaging in human tissues
Tiangang Wang, Xuanmin Chen, Yujuan Han, et al.
Nucleic Acids Research (2024) Vol. 53, Iss. D1, pp. D582-D594
Open Access | Times Cited: 2
Page 1 - Next Page

Scroll to top