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OpenAlex Citation Counts

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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

Automated assembly of molecular mechanisms at scale from text mining and curated databases
John A. Bachman, Benjamin M. Gyori, Peter K. Sorger
Molecular Systems Biology (2023) Vol. 19, Iss. 5
Open Access | Times Cited: 29

Showing 1-25 of 29 citing articles:

Nociceptor-immune interactomes reveal insult-specific immune signatures of pain
Aakanksha Jain, Benjamin M. Gyori, Sara Hakim, et al.
Nature Immunology (2024) Vol. 25, Iss. 7, pp. 1296-1305
Open Access | Times Cited: 12
MatKG: An autonomously generated knowledge graph in Material Science
Vineeth Venugopal, Elsa Olivetti
Scientific Data (2024) Vol. 11, Iss. 1
Open Access | Times Cited: 10
Illuminating function of the understudied druggable kinome
Shawn M. Gomez, Alison D. Axtman, Timothy M. Willson, et al.
Drug Discovery Today (2024) Vol. 29, Iss. 3, pp. 103881-103881
Closed Access | Times Cited: 5
reguloGPT: Harnessing GPT for Knowledge Graph Construction of Molecular Regulatory Pathways
Xidong Wu, Yiming Zeng, Arun Das, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 5
Precious3GPT: Multimodal Multi-Species Multi-Omics Multi-Tissue Transformer for Aging Research and Drug Discovery
Fedor Galkin, Владимир Наумов, Stefan Pushkov, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 5
Beyond protein lists: AI-assisted interpretation of proteomic investigations in the context of evolving scientific knowledge
Benjamin M. Gyori, Olga Vitek
Nature Methods (2024) Vol. 21, Iss. 8, pp. 1387-1389
Closed Access | Times Cited: 4
ENQUIRE automatically reconstructs, expands, and drives enrichment analysis of gene and Mesh co-occurrence networks from context-specific biomedical literature
Luca Musella, A. Castro, Xin Lai, et al.
PLoS Computational Biology (2025) Vol. 21, Iss. 2, pp. e1012745-e1012745
Open Access
Prediction and curation of missing biomedical identifier mappings with Biomappings
Charles Tapley Hoyt, Amelia Hoyt, Benjamin M. Gyori
Bioinformatics (2023) Vol. 39, Iss. 4
Open Access | Times Cited: 7
Knowledge Graphs and Their Applications in Drug Discovery
Tim James, Holger Hennig
Methods in molecular biology (2023), pp. 203-221
Closed Access | Times Cited: 7
Large-scale knowledge graph representations of disease processes
Matti Hoch, Shailendra Gupta, Olaf Wolkenhauer
Current Opinion in Systems Biology (2024) Vol. 38, pp. 100517-100517
Open Access | Times Cited: 2
BioKC: a collaborative platform for curation and annotation of molecular interactions
Carlos Vega, Marek Ostaszewski, Valentin Grouès, et al.
Database (2024) Vol. 2024
Open Access | Times Cited: 1
drGAT: Attention-Guided Gene Assessment of Drug Response Utilizing a Drug-Cell-Gene Heterogeneous Network
Yoshitaka Inoue, Hunmin Lee, Tianfan Fu, et al.
(2024)
Open Access | Times Cited: 1
WWAD: the most comprehensive small molecule World Wide Approved Drug database of therapeutics
П.И. Савосина, D.S. Druzhilovskiy, Dmitry Filimonov, et al.
Frontiers in Pharmacology (2024) Vol. 15
Open Access | Times Cited: 1
Bacterial microbiota in different types of processed meat products: diversity, adaptation, and co-occurrence
Qianli Huang, Huijuan Zhang, Li Zhang, et al.
Critical Reviews in Food Science and Nutrition (2023), pp. 1-16
Closed Access | Times Cited: 3
Optimal adjustment sets for causal query estimation in partially observed biomolecular networks
Sara Mohammad-Taheri, Vartika Tewari, Rohan Kapre, et al.
Bioinformatics (2023) Vol. 39, Iss. Supplement_1, pp. i494-i503
Open Access | Times Cited: 2
Predicting protein and pathway associations for understudied dark kinases using pattern-constrained knowledge graph embedding
Mariah Salcedo, Nathan Gravel, Abbas Keshavarzi, et al.
PeerJ (2023) Vol. 11, pp. e15815-e15815
Open Access | Times Cited: 2
Multi-scale models of whole cells: progress and challenges
Konstantia Georgouli, Jae-Seung Yeom, Robert C. Blake, et al.
Frontiers in Cell and Developmental Biology (2023) Vol. 11
Open Access | Times Cited: 2
Extending BioMASS to construct mathematical models from external knowledge
Kiwamu Arakane, Hiroaki Imoto, Fabian Ormersbach, et al.
Bioinformatics Advances (2024) Vol. 4, Iss. 1
Open Access
Eliater: A Python package for estimating outcomes of perturbations in biomolecular networks
Sara Mohammad-Taheri, Pruthvi Prakash Navada, Charles Tapley Hoyt, et al.
Bioinformatics (2024) Vol. 40, Iss. 9
Open Access
The ENDOMIX project: an interdisciplinary approach to understanding how real-life chemical mixtures target the immune system to trigger disease
Ana Claudia Zenclussen, Valentina Belmar Erilkin, Linda Böhmert, et al.
Open Research Europe (2024) Vol. 4, pp. 271-271
Open Access
Large Language Models for Pathway Curation: A Preliminary Investigation
Nikitha Karkera, Nikshita Karkera, Mahanash Kumar, et al.
Elsevier eBooks (2024)
Open Access
Large Language Models for Pathway Curation: A Preliminary Investigation
Nikitha Karkera, Nikshita Karkera, Mahanash Kumar, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access
Integromics: Tracking the Multi-omic Expanse in Theragnostics
Shambhavee Srivastav, Lavanya Lavanya, Anupama Sharma Avasthi, et al.
(2024), pp. 135-173
Closed Access
Protein–Protein Interaction Networks Derived from Classical and Machine Learning-Based Natural Language Processing Tools
David J. Degnan, Clayton W. Strauch, Moses Obiri, et al.
Journal of Proteome Research (2024) Vol. 23, Iss. 12, pp. 5395-5404
Closed Access
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