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OpenAlex Citation Counts

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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

Large-scale k-mer-based analysis of the informational properties of genomes, comparative genomics and taxonomy
Yuval Bussi, Ruti Kapon, Ziv Reich
PLoS ONE (2021) Vol. 16, Iss. 10, pp. e0258693-e0258693
Open Access | Times Cited: 33

Showing 1-25 of 33 citing articles:

A Survey of K-mer Methods and Applications in Bioinformatics
Camille Moeckel, Manvita Mareboina, Maxwell A. Konnaris, et al.
Computational and Structural Biotechnology Journal (2024) Vol. 23, pp. 2289-2303
Open Access | Times Cited: 19
Themisto: a scalable colored k-mer index for sensitive pseudoalignment against hundreds of thousands of bacterial genomes
Jarno Alanko, Jaakko Vuohtoniemi, Tommi Mäklin, et al.
Bioinformatics (2023) Vol. 39, Iss. Supplement_1, pp. i260-i269
Open Access | Times Cited: 31
Predicting microbial growth conditions from amino acid composition
Tyler P. Barnum, Alexander Crits‐Christoph, Michael Molla, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 10
Reconstruction of the human amylase locus reveals ancient duplications seeding modern-day variation
Feyza Yilmaz, Charikleia Karageorgiou, Kwondo Kim, et al.
Science (2024) Vol. 386, Iss. 6724
Closed Access | Times Cited: 6
Genome-powered classification of microbial eukaryotes: focus on coral algal symbionts
Katherine E. Dougan, Raúl A. González‐Pech, Timothy G. Stephens, et al.
Trends in Microbiology (2022) Vol. 30, Iss. 9, pp. 831-840
Open Access | Times Cited: 27
CGRWDL: alignment-free phylogeny reconstruction method for viruses based on chaos game representation weighted by dynamical language model
Ting Wang, Zu‐Guo Yu, Jinyan Li
Frontiers in Microbiology (2024) Vol. 15
Open Access | Times Cited: 5
DandD: Efficient measurement of sequence growth and similarity
Jessica Bonnie, Omar Ahmed, Ben Langmead
iScience (2024) Vol. 27, Iss. 3, pp. 109054-109054
Open Access | Times Cited: 4
MDFGNN-SMMA: prediction of potential small molecule-miRNA associations based on multi-source data fusion and graph neural networks
Jianwei Li, X Zhang, Bing Li, et al.
BMC Bioinformatics (2025) Vol. 26, Iss. 1
Open Access
Rapid, reference-free identification of bacterial pathogen transmission using optimized split k-mer analysis
Christopher Connor, Charlie Higgs, Kristy Horan, et al.
Microbial Genomics (2025) Vol. 11, Iss. 3
Open Access
ProbML: A Machine Learning‐Based Genome Classifier for Identifying Probiotic Organisms
Arjun Orkkatteri Krishnan, Lalit Narayan Mudgal, Vivek Kumar Soni, et al.
Molecular Nutrition & Food Research (2025)
Closed Access
A k-mer-Based Approach for Phylogenetic Classification of Taxa in Environmental Genomic Data
Julia Van Etten, Timothy G. Stephens, Debashish Bhattacharya
Systematic Biology (2023) Vol. 72, Iss. 5, pp. 1101-1118
Closed Access | Times Cited: 9
Random adversarial threshold search enables automated DNA screening
Dana Gretton, Brian Wang, Rey Edison, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 3
Themisto: a scalable coloredk-mer index for sensitive pseudoalignment against hundreds of thousands of bacterial genomes
Jarno Alanko, Jaakko Vuohtoniemi, Tommi Mäklin, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access | Times Cited: 7
MetageNN: a memory-efficient neural network taxonomic classifier robust to sequencing errors and missing genomes
Rafael Peres da Silva, Chayaporn Suphavilai, Niranjan Nagarajan
BMC Bioinformatics (2024) Vol. 25, Iss. S1
Open Access | Times Cited: 2
Hijacking a rapid and scalable metagenomic method reveals subgenome dynamics and evolution in polyploid plants
Gillian Reynolds, Brendan Mumey, Veronika Strnadová-Neeley, et al.
Applications in Plant Sciences (2024) Vol. 12, Iss. 4
Open Access | Times Cited: 2
KINN: An alignment-free accurate phylogeny reconstruction method based on inner distance distributions of k-mer pairs in biological sequences
Runbin Tang, Zuguo Yu, Jinyan Li
Molecular Phylogenetics and Evolution (2022) Vol. 179, pp. 107662-107662
Closed Access | Times Cited: 12
SEBGLMA: Semantic Embedded Bipartite Graph Network for Predicting lncRNA-miRNA Associations
Zhengyang Zhao, Jie Lin, Zhen Wang, et al.
International Journal of Intelligent Systems (2023) Vol. 2023, pp. 1-15
Open Access | Times Cited: 6
The determinants of the rarity of nucleic and peptide short sequences in nature
Nikol Chantzi, Manvita Mareboina, Maxwell A. Konnaris, et al.
NAR Genomics and Bioinformatics (2024) Vol. 6, Iss. 2
Open Access | Times Cited: 2
Metazoa‐level USCOs as markers in species delimitation and classification
Lars Dietz, Christoph Mayer, Eckart Stolle, et al.
Molecular Ecology Resources (2023) Vol. 24, Iss. 3
Open Access | Times Cited: 4
Annotation-free prediction of microbial dioxygen utilization
Avi I. Flamholz, Joshua E. Goldford, Elin M. Larsson, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 1
OrthoPhyl—streamlining large-scale, orthology-based phylogenomic studies of bacteria at broad evolutionary scales
Earl A. Middlebrook, Robab Katani, Jeanne M. Fair
G3 Genes Genomes Genetics (2024) Vol. 14, Iss. 8
Open Access | Times Cited: 1
JACC-FPGA: A hardware accelerator for Jaccard similarity estimation using FPGAs in the cloud
Javier E. Soto, C. Hernández, Miguel Figueroa
Future Generation Computer Systems (2022) Vol. 138, pp. 26-42
Closed Access | Times Cited: 7
Frequentmers - a novel way to look at metagenomic next generation sequencing data and an application in detecting liver cirrhosis
Ioannis Mouratidis, Nikol Chantzi, Umair Khan, et al.
BMC Genomics (2023) Vol. 24, Iss. 1
Open Access | Times Cited: 3
Computationally Efficient Assembly of Pseudomonas aeruginosa Gene Expression Compendia
Georgia Doing, Alexandra Lee, Samuel L. Neff, et al.
mSystems (2022) Vol. 8, Iss. 1
Open Access | Times Cited: 5
A novel part-wise template matching technique for DNA sequence similarity identification
Machbah Uddin, Mohammad Khairul Islam, Md. Rakib Hassan, et al.
(2022), pp. 882-887
Closed Access | Times Cited: 3
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