Open Access Helper

OpenAlex Citation Counts

OpenAlex Citations Logo

OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

Predicting the viability of beta-lactamase: How folding and binding free energies correlate with beta-lactamase fitness
Jordan Yang, Nandita Naik, Jagdish Suresh Patel, et al.
PLoS ONE (2020) Vol. 15, Iss. 5, pp. e0233509-e0233509
Open Access | Times Cited: 27

Showing 1-25 of 27 citing articles:

Informed training set design enables efficient machine learning-assisted directed protein evolution
Bruce J. Wittmann, Yisong Yue, Frances H. Arnold
Cell Systems (2021) Vol. 12, Iss. 11, pp. 1026-1045.e7
Open Access | Times Cited: 158
Selection enhances protein evolvability by increasing mutational robustness and foldability
Jia Zheng, Ning Guo, Andreas Wagner
Science (2020) Vol. 370, Iss. 6521
Open Access | Times Cited: 102
Evolution, folding, and design of TIM barrels and related proteins
Sergio Romero‐Romero, Sina Kordes, Florian Michel, et al.
Current Opinion in Structural Biology (2021) Vol. 68, pp. 94-104
Open Access | Times Cited: 47
Enhancing the Stability of Sweet Protein Neoculin for Food Applications Using Computational Strategies
Mingxue Ma, Sai Shi, Zhifen Huang, et al.
Journal of Agricultural and Food Chemistry (2025)
Closed Access
The Interplay of Electrostatics and Chemical Positioning in the Evolution of Antibiotic Resistance in TEM β-Lactamases
Samuel H. Schneider, Jacek Kozuch, Steven G. Boxer
ACS Central Science (2021) Vol. 7, Iss. 12, pp. 1996-2008
Open Access | Times Cited: 29
Statistical modeling to quantify the uncertainty of FoldX-predicted protein folding and binding stability
Yesol Sapozhnikov, Jagdish Suresh Patel, F. Marty Ytreberg, et al.
BMC Bioinformatics (2023) Vol. 24, Iss. 1
Open Access | Times Cited: 12
Implementing and Assessing an Alchemical Method for Calculating Protein–Protein Binding Free Energy
Dharmeshkumar Patel, Jagdish Suresh Patel, F. Marty Ytreberg
Journal of Chemical Theory and Computation (2021) Vol. 17, Iss. 4, pp. 2457-2464
Open Access | Times Cited: 26
EfgA is a conserved formaldehyde sensor that leads to bacterial growth arrest in response to elevated formaldehyde
Jannell V. Bazurto, Dipti D. Nayak, Tomislav Ticak, et al.
PLoS Biology (2021) Vol. 19, Iss. 5, pp. e3001208-e3001208
Open Access | Times Cited: 18
Assessment of software methods for estimating protein-protein relative binding affinities
Tawny R. Gonzalez, Kyle P. Martin, Jonathan E. Barnes, et al.
PLoS ONE (2020) Vol. 15, Iss. 12, pp. e0240573-e0240573
Open Access | Times Cited: 20
Machine Learning-Assisted Directed Evolution Navigates a Combinatorial Epistatic Fitness Landscape with Minimal Screening Burden
Bruce J. Wittmann, Yisong Yue, Frances H. Arnold
bioRxiv (Cold Spring Harbor Laboratory) (2020)
Open Access | Times Cited: 16
LYRUS: a machine learning model for predicting the pathogenicity of missense variants
Jiaying Lai, Jordan Yang, Ece D. Gamsiz Uzun, et al.
Bioinformatics Advances (2021) Vol. 2, Iss. 1
Open Access | Times Cited: 9
Predicting binding affinity changes from long‐distance mutations using molecular dynamics simulations and Rosetta
Nicholas G. M. Wells, Colin A. Smith
Proteins Structure Function and Bioinformatics (2023) Vol. 91, Iss. 7, pp. 920-932
Open Access | Times Cited: 3
Computational design towards a boiling-resistant single-chain sweet protein monellin
Yanmei Liu, Jiayu Xu, Mingxue Ma, et al.
Food Chemistry (2023) Vol. 440, pp. 138279-138279
Closed Access | Times Cited: 3
The structure-fitness landscape of pairwise relations in generative sequence models
D. Bradford Marshall, Haobo Wang, Michael A. Stiffler, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2020)
Open Access | Times Cited: 8
Defining the HIV Capsid Binding Site of Nucleoporin 153
Shunji Li, Jagdish Suresh Patel, Jordan Yang, et al.
mSphere (2022) Vol. 7, Iss. 5
Open Access | Times Cited: 5
EfgA is a conserved formaldehyde sensor that halts bacterial translation in response to elevated formaldehyde
Jannell V. Bazurto, Dipti D. Nayak, Tomislav Ticak, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2020)
Open Access | Times Cited: 6
High-Accuracy Prediction of Stabilizing Surface Mutations to the Three-Helix Bundle, UBA(1), with EmCAST
Michael T. Rothfuss, Dustin C. Becht, Baisen Zeng, et al.
Journal of the American Chemical Society (2023) Vol. 145, Iss. 42, pp. 22979-22992
Closed Access | Times Cited: 2
Assessment of Software Methods for Estimating Protein-Protein Relative Binding Affinities
Tawny R. Gonzalez, Kyle P. Martin, Jonathan E. Barnes, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2020)
Open Access | Times Cited: 4
Revisiting the hydrolysis of ampicillin catalyzed by Temoneira‐1 β‐lactamase, and the effect of Ni(II), Cd(II) and Hg(II)
Zeyad Hasan Abdullah Nafaee, Viktória Egyed, Attila Jancsó, et al.
Protein Science (2023) Vol. 32, Iss. 12
Open Access | Times Cited: 1
Computational Studies of the Structural Basis of Human RPS19 Mutations Associated With Diamond-Blackfan Anemia
Ke An, Jingbo Zhou, Yao Xiong, et al.
Frontiers in Genetics (2021) Vol. 12
Open Access | Times Cited: 3
Switching an active site helix in dihydrofolate reductase reveals limits to sub-domain modularity
Victor Y. Zhao, João V. Rodrigues, Elena R. Lozovsky, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2021)
Open Access | Times Cited: 1
Switching an active site helix in dihydrofolate reductase reveals limits to subdomain modularity
Victor Y. Zhao, João V. Rodrigues, Elena R. Lozovsky, et al.
Biophysical Journal (2021) Vol. 120, Iss. 21, pp. 4738-4750
Open Access | Times Cited: 1
Implementing and assessing an alchemical method for calculating protein-protein binding free energy
Dharmeshkumar Patel, Jagdish Suresh Patel, F. Marty Ytreberg
bioRxiv (Cold Spring Harbor Laboratory) (2020)
Open Access
Predicting binding affinity changes from long-distance mutations using MD simulations and Rosetta
Nicholas G. M. Wells, Colin A. Smith
bioRxiv (Cold Spring Harbor Laboratory) (2022)
Open Access
Defining the HIV Capsid Binding Site of Nucleoporin 153
Shunji Li, Jagdish Suresh Patel, Jordan Yang, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2022)
Open Access
Page 1 - Next Page

Scroll to top