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OpenAlex Citation Counts

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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

Cooltools: Enabling high-resolution Hi-C analysis in Python
Nezar Abdennur, Sameer Abraham, Geoffrey Fudenberg, et al.
PLoS Computational Biology (2024) Vol. 20, Iss. 5, pp. e1012067-e1012067
Open Access | Times Cited: 97

Showing 1-25 of 97 citing articles:

Region Capture Micro-C reveals coalescence of enhancers and promoters into nested microcompartments
Viraat Y. Goel, Miles K. Huseyin, Anders S. Hansen
Nature Genetics (2023) Vol. 55, Iss. 6, pp. 1048-1056
Open Access | Times Cited: 128
RNA polymerase II dynamics shape enhancer–promoter interactions
Gilad Barshad, James J. Lewis, Alexandra G. Chivu, et al.
Nature Genetics (2023) Vol. 55, Iss. 8, pp. 1370-1380
Open Access | Times Cited: 71
Pairtools: from sequencing data to chromosome contacts
Nezar Abdennur, Geoffrey Fudenberg, Ilya M. Flyamer, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access | Times Cited: 70
Glioblastoma evolution and heterogeneity from a 3D whole-tumor perspective
Radhika Mathur, Qixuan Wang, Patrick G. Schupp, et al.
Cell (2024) Vol. 187, Iss. 2, pp. 446-463.e16
Open Access | Times Cited: 68
Pairtools: From sequencing data to chromosome contacts
Nezar Abdennur, Geoffrey Fudenberg, Ilya M. Flyamer, et al.
PLoS Computational Biology (2024) Vol. 20, Iss. 5, pp. e1012164-e1012164
Open Access | Times Cited: 58
Rules of engagement for condensins and cohesins guide mitotic chromosome formation
Kumiko Samejima, Johan H. Gibcus, Sameer Abraham, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 18
High-throughput Oligopaint screen identifies druggable 3D genome regulators
Daniel Park, Son C. Nguyen, Randi Isenhart, et al.
Nature (2023) Vol. 620, Iss. 7972, pp. 209-217
Closed Access | Times Cited: 30
Ultra-long-range interactions between active regulatory elements
Elias T. Friman, Ilya M. Flyamer, Davide Marenduzzo, et al.
Genome Research (2023) Vol. 33, Iss. 8, pp. 1269-1283
Open Access | Times Cited: 27
Extrusion fountains are hallmarks of chromosome organization emerging upon zygotic genome activation
Aleksandra A. Galitsyna, Sergey V. Ulianov, Nikolai S. Bykov, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access | Times Cited: 23
Transcription decouples estrogen-dependent changes in enhancer-promoter contact frequencies and spatial proximity
Luciana I. Gómez Acuña, Ilya M. Flyamer, Shelagh Boyle, et al.
PLoS Genetics (2024) Vol. 20, Iss. 5, pp. e1011277-e1011277
Open Access | Times Cited: 14
Analysis and culturing of the prototypic crAssphage reveals a phage-plasmid lifestyle
Danica T. Schmidtke, Angela Shang-Mei Hickey, Ivan Liachko, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 13
YY1-controlled regulatory connectivity and transcription are influenced by the cell cycle
Jessica Lam, Nicholas Aboreden, Susannah C. Midla, et al.
Nature Genetics (2024) Vol. 56, Iss. 9, pp. 1938-1952
Closed Access | Times Cited: 13
Pervasive structural heterogeneity rewires glioblastoma chromosomes to sustain patient-specific transcriptional programs
Ting Xie, Adi Danieli‐Mackay, Mariachiara Buccarelli, et al.
Nature Communications (2024) Vol. 15, Iss. 1
Open Access | Times Cited: 11
Systematic assessment of ISWI subunits shows that NURF creates local accessibility for CTCF
Mario Iurlaro, Francesca Masoni, Ilya M. Flyamer, et al.
Nature Genetics (2024) Vol. 56, Iss. 6, pp. 1203-1212
Open Access | Times Cited: 10
Transcription regulates the spatio-temporal dynamics of genes through micro-compartmentalization
Hossein Salari, Geneviève Fourel, Daniel Jost
Nature Communications (2024) Vol. 15, Iss. 1
Open Access | Times Cited: 9
Stiff extracellular matrix drives the differentiation of mesenchymal stem cells toward osteogenesis by the multiscale 3D genome reorganization
Jing Na, Chengzheng Tai, Ziyi Wang, et al.
Biomaterials (2024) Vol. 312, pp. 122715-122715
Closed Access | Times Cited: 9
Droplet Hi-C enables scalable, single-cell profiling of chromatin architecture in heterogeneous tissues
Lei Chang, Yang Xie, Brett M. Taylor, et al.
Nature Biotechnology (2024)
Open Access | Times Cited: 9
Multiscale modelling of chromatin 4D organization in SARS-CoV-2 infected cells
Andrea M. Chiariello, Alex Abraham, Simona Bianco, et al.
Nature Communications (2024) Vol. 15, Iss. 1
Open Access | Times Cited: 8
High-Resolution Genome-Wide Maps Reveal Widespread Presence of Torsional Insulation
Porter M. Hall, Lauren A. Mayse, Lu Bai, et al.
(2025)
Open Access | Times Cited: 1
A common molecular mechanism underlying Cornelia de Lange and CHOPS syndromes
Toyonori Sakata, Shoin Tei, Kosuke Izumi, et al.
Current Biology (2025)
Open Access | Times Cited: 1
Quantitative control of Ets1 dosage by a multi-enhancer hub promotes Th1 cell differentiation and protects from allergic inflammation
Aditi Chandra, Sora Yoon, Michaël F. Michieletto, et al.
Immunity (2023) Vol. 56, Iss. 7, pp. 1451-1467.e12
Open Access | Times Cited: 17
Activity-driven chromatin organization during interphase: Compaction, segregation, and entanglement suppression
Brian Chan, Michael Rubinstein
Proceedings of the National Academy of Sciences (2024) Vol. 121, Iss. 21
Open Access | Times Cited: 7
Topoisomerase-modulated genome-wide DNA supercoiling domains colocalize with nuclear compartments and regulate human gene expression
Qian Yao, Linying Zhu, Zhen Shi, et al.
Nature Structural & Molecular Biology (2024)
Closed Access | Times Cited: 7
Cooperative insulation of regulatory domains by CTCF-dependent physical insulation and promoter competition
Thais Ealo, Víctor Sánchez-Gaya, Patricia Respuela, et al.
Nature Communications (2024) Vol. 15, Iss. 1
Open Access | Times Cited: 7
Synergy between cis-regulatory elements can render cohesin dispensable for distal enhancer function
Karissa Hansen, Annie S. Adachi, Luca Braccioli, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 7
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