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OpenAlex Citation Counts

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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

A structured evaluation of genome-scale constraint-based modeling tools for microbial consortia
William T. Scott, Sara Benito-Vaquerizo, Johannes Zimmermann, et al.
PLoS Computational Biology (2023) Vol. 19, Iss. 8, pp. e1011363-e1011363
Open Access | Times Cited: 24

Showing 24 citing articles:

Predicting microbial interactions with approaches based on flux balance analysis: an evaluation
Clémence Joseph, Haris Zafeiropoulos, Kristel Bernaerts, et al.
BMC Bioinformatics (2024) Vol. 25, Iss. 1
Open Access | Times Cited: 11
Deciphering and designing microbial communities by genome-scale metabolic modelling
Shengbo Wu, Zheping Qu, Danlei Chen, et al.
Computational and Structural Biotechnology Journal (2024) Vol. 23, pp. 1990-2000
Open Access | Times Cited: 8
Community‐scale models of microbiomes: Articulating metabolic modelling and metagenome sequencing
Klara Cerk, Pablo Ugalde‐Salas, Chabname Ghassemi Nedjad, et al.
Microbial Biotechnology (2024) Vol. 17, Iss. 1
Open Access | Times Cited: 6
MIGRENE: The Toolbox for Microbial and Individualized GEMs, Reactobiome and Community Network Modelling
Gholamreza Bidkhori, Saeed Shoaie
Metabolites (2024) Vol. 14, Iss. 3, pp. 132-132
Open Access | Times Cited: 6
Emerging tools and best practices for studying gut microbial community metabolism
Cecilia Noecker, Peter J. Turnbaugh
Nature Metabolism (2024) Vol. 6, Iss. 7, pp. 1225-1236
Closed Access | Times Cited: 6
A new flavor of synthetic yeast communities sees the light
Vicente Rojas, Daniela S. Rivera, Carlos Alberto Ruiz, et al.
mBio (2025)
Open Access
Synthetic biology tools for environmental protection
Javad Aminian-Dehkordi, Shadi Rahimi, Mehdi Golzar-Ahmadi, et al.
Biotechnology Advances (2023) Vol. 68, pp. 108239-108239
Open Access | Times Cited: 18
More is Different: Metabolic Modeling of Diverse Microbial Communities
Christian Diener, Sean M. Gibbons
mSystems (2023) Vol. 8, Iss. 2
Open Access | Times Cited: 15
Biobased short chain fatty acid production - Exploring microbial community dynamics and metabolic networks through kinetic and microbial modeling approaches
Merve Atasoy, William T. Scott, Alberte Regueira, et al.
Biotechnology Advances (2024) Vol. 73, pp. 108363-108363
Open Access | Times Cited: 5
Starting with screening strains to construct synthetic microbial communities (SynComs) for traditional food fermentation
Xinyi Jiang, Zheng Peng, Juan Zhang
Food Research International (2024) Vol. 190, pp. 114557-114557
Closed Access | Times Cited: 5
Review on computer-assisted biosynthetic capacities elucidation to assess metabolic interactions and communication within microbial communities
Mahnoor Zulfiqar, Vinay Singh, Christoph Steinbeck, et al.
Critical Reviews in Microbiology (2024), pp. 1-40
Open Access | Times Cited: 4
Flux sampling in genome-scale metabolic modeling of microbial communities
Patrick E. Gelbach, Handan Çetin, Stacey D. Finley
BMC Bioinformatics (2024) Vol. 25, Iss. 1
Open Access | Times Cited: 4
Transporter annotations are holding up progress in metabolic modeling
John R. Casey, Brian J. Bennion, Patrik D’haeseleer, et al.
Frontiers in Systems Biology (2024) Vol. 4
Open Access | Times Cited: 2
Food-breastmilk combinations alter the colonic microbiome of weaning infants: an in silico study
Vítor Geniselli da Silva, Nick W. Smith, Jane Mullaney, et al.
mSystems (2024) Vol. 9, Iss. 9
Open Access | Times Cited: 2
Microbiome Modeling: A Beginner’s Guide
Emanuel Lange, Lena Kranert, Jacob Krüger, et al.
(2024)
Open Access | Times Cited: 1
Microbiome modeling: a beginner's guide
Emanuel Lange, Lena Kranert, Jacob Krüger, et al.
Frontiers in Microbiology (2024) Vol. 15
Open Access | Times Cited: 1
Bacterial community dynamics as a result of growth-yield trade-off and multispecies metabolic interactions toward understanding the gut biofilm niche
Amin Valiei, Andrew Dickson, Javad Aminian-Dehkordi, et al.
BMC Microbiology (2024) Vol. 24, Iss. 1
Open Access | Times Cited: 1
Flux Sampling in Genome-scale Metabolic Modeling of Microbial Communities
Patrick E. Gelbach, Stacey D. Finley
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access | Times Cited: 4
Reconstruction and analysis of gut microbiota metabolic networks in the context of personalized nutrition.
Telmo Blasco
(2024)
Open Access
Virtual Colon: Spatiotemporal modelling of metabolic interactions in a computational colonic environment
Γεώργιος Μαρίνος, Johannes Zimmermann, Jan Taubenheim, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access
Top-down and bottom-up microbiome engineering approaches to enable biomanufacturing from waste biomass
Xuejiao Lyu, Mujaheed Nuhu, Pieter Candry, et al.
Journal of Industrial Microbiology & Biotechnology (2024) Vol. 51
Open Access
Auxotrophy-based curation improves the consensus genome-scale metabolic model of yeast
S S Han, Ke Wu, Yonghong Wang, et al.
Synthetic and Systems Biotechnology (2024) Vol. 9, Iss. 4, pp. 861-870
Open Access
Omics and Community Modeling Applications in Genome-Scale Metabolic Models
Muhammed Erkan Karabekmez, Merve Yarıcı
Elsevier eBooks (2024)
Closed Access
Metabolic modelling uncovers the complex interplay between fungal probiotics, poultry microbiomes, and diet
Montazar Al-Nijir, Christopher J. Chuck, M.R. Bedford, et al.
Microbiome (2024) Vol. 12, Iss. 1
Open Access
Genome-scale metabolic modelling reveals interactions and key roles of symbiont clades in a sponge holobiont
Shan Zhang, Weizhi Song, Γεώργιος Μαρίνος, et al.
Nature Communications (2024) Vol. 15, Iss. 1
Open Access
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