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OpenAlex Citation Counts

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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

INTEGRATE: Model-based multi-omics data integration to characterize multi-level metabolic regulation
Marzia Di Filippo, Dario Pescini, Bruno G. Galuzzi, et al.
PLoS Computational Biology (2022) Vol. 18, Iss. 2, pp. e1009337-e1009337
Open Access | Times Cited: 40

Showing 1-25 of 40 citing articles:

Small molecule metabolites: discovery of biomarkers and therapeutic targets
Shi Qiu, Ying Cai, Hong Yao, et al.
Signal Transduction and Targeted Therapy (2023) Vol. 8, Iss. 1
Open Access | Times Cited: 331
The Warburg Effect Explained: Integration of Enhanced Glycolysis with Heterogeneous Mitochondria to Promote Cancer Cell Proliferation
Lilia Alberghina
International Journal of Molecular Sciences (2023) Vol. 24, Iss. 21, pp. 15787-15787
Open Access | Times Cited: 32
Recent advances in mass spectrometry-based computational metabolomics
Timothy M. D. Ebbels, Justin J. J. van der Hooft, Haley Chatelaine, et al.
Current Opinion in Chemical Biology (2023) Vol. 74, pp. 102288-102288
Open Access | Times Cited: 30
Genome-scale models in human metabologenomics
Adil Mardinoğlu, Bernhard Ø. Palsson
Nature Reviews Genetics (2024)
Closed Access | Times Cited: 9
Ten quick tips for avoiding pitfalls in multi-omics data integration analyses
Davide Chicco, Fabio Cumbo, Claudio Angione
PLoS Computational Biology (2023) Vol. 19, Iss. 7, pp. e1011224-e1011224
Open Access | Times Cited: 18
Review on computer-assisted biosynthetic capacities elucidation to assess metabolic interactions and communication within microbial communities
Mahnoor Zulfiqar, Vinay Singh, Christoph Steinbeck, et al.
Critical Reviews in Microbiology (2024), pp. 1-40
Open Access | Times Cited: 5
Insights into the response and tolerance mechanisms of Papiliotrema laurentii to acetic acid stress by RNA-seq and genome-scale metabolic modeling analysis
Eduardo Luís Menezes de Almeida, Wendel Batista da Silveira
Biochemical Engineering Journal (2025), pp. 109634-109634
Closed Access
The Inflammatory Mechanism of Parkinson’s Disease: Gut Microbiota Metabolites Affect the Development of the Disease Through the Gut–Brain Axis
Ai Gao, Jiaqi Lv, Yanwei Su
Brain Sciences (2025) Vol. 15, Iss. 2, pp. 159-159
Open Access
Construction of Multiscale Genome-Scale Metabolic Models: Frameworks and Challenges
Xinyu Bi, Yanfeng Liu, Jianghua Li, et al.
Biomolecules (2022) Vol. 12, Iss. 5, pp. 721-721
Open Access | Times Cited: 22
Recreating metabolic interactions of the tumour microenvironment
Rodrigo Curvello, Nikolaus Berndt, Sandra Hauser, et al.
Trends in Endocrinology and Metabolism (2024) Vol. 35, Iss. 6, pp. 518-532
Closed Access | Times Cited: 4
Machine learning for the advancement of genome-scale metabolic modeling
Pritam Kundu, Satyajit Beura, Suman Mondal, et al.
Biotechnology Advances (2024) Vol. 74, pp. 108400-108400
Closed Access | Times Cited: 4
Feed-forward loop improves the transient dynamics of an antithetic biological controller
Thales R. Spartalis, Mathias Foo, Xun Tang
Journal of The Royal Society Interface (2025) Vol. 22, Iss. 222
Open Access
Metagenome-scale community metabolic modelling for understanding the role of gut microbiota in human health
Satyajit Beura, Pritam Kundu, Amit Kumar Das, et al.
Computers in Biology and Medicine (2022) Vol. 149, pp. 105997-105997
Closed Access | Times Cited: 18
COVRECON: automated integration of genome- and metabolome-scale network reconstruction and data-driven inverse modeling of metabolic interaction networks
Jiahang Li, Steffen Waldherr, Wolfram Weckwerth
Bioinformatics (2023) Vol. 39, Iss. 7
Open Access | Times Cited: 7
Adjusting for false discoveries in constraint-based differential metabolic flux analysis
Bruno G. Galuzzi, Luca Milazzo, Chiara Damiani
Journal of Biomedical Informatics (2024) Vol. 150, pp. 104597-104597
Open Access | Times Cited: 2
A review of advances in integrating gene regulatory networks and metabolic networks for designing strain optimization
Ridho Ananda, Kauthar Mohd Daud, Suhaila Zainudin
Journal of King Saud University - Computer and Information Sciences (2024) Vol. 36, Iss. 6, pp. 102120-102120
Open Access | Times Cited: 2
Gene signatures for cancer research: A 25-year retrospective and future avenues
Wei Liu, Huaqin He, Davide Chicco
PLoS Computational Biology (2024) Vol. 20, Iss. 10, pp. e1012512-e1012512
Open Access | Times Cited: 2
Combining denoising of RNA-seq data and flux balance analysis for cluster analysis of single cells
Bruno G. Galuzzi, Marco Vanoni, Chiara Damiani
BMC Bioinformatics (2022) Vol. 23, Iss. S6
Open Access | Times Cited: 10
Underground metabolism as a rich reservoir for pathway engineering
Szabolcs Cselgő Kovács, Balázs Szappanos, Roland Tengölics, et al.
Bioinformatics (2022) Vol. 38, Iss. 11, pp. 3070-3077
Open Access | Times Cited: 8
Integration of CRISPR/Cas9 with multi-omics technologies to engineer secondary metabolite productions in medicinal plant: Challenges and Prospects
Anupriya Borah, Sumit Kumar Singh, Rituja Chattopadhyay, et al.
Functional & Integrative Genomics (2024) Vol. 24, Iss. 6
Closed Access | Times Cited: 1
How artificial intelligence enables modeling and simulation of biological networks to accelerate drug discovery
Mauro DiNuzzo
Frontiers in Drug Discovery (2022) Vol. 2
Open Access | Times Cited: 6
The Expectation and Reality of the HepG2 Core Metabolic Profile
Olga I. Kiseleva, Ilya Y. Kurbatov, Viktoriia A. Arzumanian, et al.
Metabolites (2023) Vol. 13, Iss. 8, pp. 908-908
Open Access | Times Cited: 3
Uses of Multi-Objective Flux Analysis for Optimization of Microbial Production of Secondary Metabolites
Marc Griesemer, Ali Navid
Microorganisms (2023) Vol. 11, Iss. 9, pp. 2149-2149
Open Access | Times Cited: 3
Non-Dominated Sorting Differential Search Algorithm for Optimizing Regulatory-Metabolic Networks by Using Probabilistic Approach
Ridho Ananda, Kauthar Mohd Daud, Suhaila Zainudin
(2023), pp. 1-6
Closed Access | Times Cited: 3
Best Practices in Flux Sampling of Constrained-Based Models
Bruno G. Galuzzi, Luca Milazzo, Chiara Damiani
Lecture notes in computer science (2023), pp. 234-248
Closed Access | Times Cited: 2
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