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OpenAlex Citation Counts

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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

Metagenomics workflow for hybrid assembly, differential coverage binning, metatranscriptomics and pathway analysis (MUFFIN)
Renaud Van Damme, Martin Hölzer, Adrian Viehweger, et al.
PLoS Computational Biology (2021) Vol. 17, Iss. 2, pp. e1008716-e1008716
Open Access | Times Cited: 32

Showing 1-25 of 32 citing articles:

Nanopore sequencing and its application to the study of microbial communities
Laura Ciuffreda, Héctor Rodríguez‐Pérez, Carlos Flores
Computational and Structural Biotechnology Journal (2021) Vol. 19, pp. 1497-1511
Open Access | Times Cited: 154
nf-core/mag: a best-practice pipeline for metagenome hybrid assembly and binning
Sabrina Krakau, Daniel Straub, Hadrien Gourlé, et al.
NAR Genomics and Bioinformatics (2022) Vol. 4, Iss. 1
Open Access | Times Cited: 48
The hitchhikers’ guide to RNA sequencing and functional analysis
Jiung-Wen Chen, Lisa Shrestha, George Green, et al.
Briefings in Bioinformatics (2023) Vol. 24, Iss. 1
Closed Access | Times Cited: 23
Enhancing Clinical Utility: Utilization of International Standards and Guidelines for Metagenomic Sequencing in Infectious Disease Diagnosis
Chau-Ming Kan, Hin Fung Tsang, Xiao M. Pei, et al.
International Journal of Molecular Sciences (2024) Vol. 25, Iss. 6, pp. 3333-3333
Open Access | Times Cited: 6
Epigenetic phase variation in the gut microbiome enhances bacterial adaptation
Mi Ni, Yu Fan, Yujie Liu, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2025)
Open Access
Determining the incidence, risk factors and biological drivers of irritable bowel syndrome (IBS) as part of the constellation of postacute sequelae of SARS-CoV-2 infection (PASC) outcomes in the Arizona CoVHORT-GI: a longitudinal cohort study
Kristen Pogreba-Brown, Erika Austhof, Caitlyn McFadden, et al.
BMJ Open (2025) Vol. 15, Iss. 1, pp. e095093-e095093
Open Access
Introduction to the principles and methods underlying the recovery of metagenome‐assembled genomes from metagenomic data
Gleb Goussarov, Mohamed Mysara, Peter Vandamme, et al.
MicrobiologyOpen (2022) Vol. 11, Iss. 3
Open Access | Times Cited: 18
Nanopore-based enrichment of antimicrobial resistance genes – a case-based study
Adrian Viehweger, Mike Marquet, Martin Hölzer, et al.
Gigabyte (2023) Vol. 2023, pp. 1-15
Open Access | Times Cited: 9
Salvaging high-quality genomes of microbial species from a meromictic lake using a hybrid sequencing approach
Yu‐Hsiang Chen, Pei‐Wen Chiang, D. Yu. Rogozin, et al.
Communications Biology (2021) Vol. 4, Iss. 1
Open Access | Times Cited: 22
The functional microbiome of grapevine throughout plant evolutionary history and lifetime
Paola Fournier, Lucile Pellan, Didac Barroso‐Bergadà, et al.
Advances in ecological research/Advances in Ecological Research (2022), pp. 27-99
Open Access | Times Cited: 15
Marine Microeukaryote Metatranscriptomics: Sample Processing and Bioinformatic Workflow Recommendations for Ecological Applications
Natalie R. Cohen, Harriet Alexander, Arianna I. Krinos, et al.
Frontiers in Marine Science (2022) Vol. 9
Open Access | Times Cited: 13
Metagenomic Analysis of Anaerobic Microbial Communities Degrading Short-Chain Fatty Acids as Sole Carbon Sources
Daniela Becker, Denny Popp, Fabian Bonk, et al.
Microorganisms (2023) Vol. 11, Iss. 2, pp. 420-420
Open Access | Times Cited: 7
Metagenome comparison (MC): A new framework for detecting unique/enriched OMUs (operational metagenomic units) derived from whole-genome sequencing reads
Zhanshan Sam
Computers in Biology and Medicine (2024) Vol. 180, pp. 108852-108852
Closed Access | Times Cited: 2
Mining of Novel Microbial Enzymes Using Metagenomics Approach for Efficient Bioremediation
Shruti Dwivedi, Supriya Gupta, Aiman Tanveer, et al.
(2023), pp. 183-198
Closed Access | Times Cited: 4
MOSCA 2.0: A bioinformatics framework for metagenomics, metatranscriptomics and metaproteomics data analysis and visualization
João C. Sequeira, Vítor Pereira, M. M. Alves, et al.
Molecular Ecology Resources (2024) Vol. 24, Iss. 7
Closed Access | Times Cited: 1
MIntO: A Modular and Scalable Pipeline For Microbiome Metagenomic and Metatranscriptomic Data Integration
Carmen Saenz, Eleonora Nigro, Vithiagaran Gunalan, et al.
Frontiers in Bioinformatics (2022) Vol. 2
Open Access | Times Cited: 7
nf-core/mag: a best-practice pipeline for metagenome hybrid assembly and binning
Sabrina Krakau, Daniel Straub, Hadrien Gourlé, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2021)
Open Access | Times Cited: 7
Bioinformatic methods for genome-centric metagenomics
R.B. Newell
(2023)
Open Access | Times Cited: 2
Microbial communities associated with marine sponges from diverse geographic locations harbour biosynthetic novelty
Vincent V. Nowak, Peng Hou, Jeremy G. Owen
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access
Metagenome-assembled genome sequences of two bacterial species from polyvinyl alcohol-degrading co-colonies
Kohei Nakamura, Sota Asano, Masashi Nambu, et al.
Microbiology Resource Announcements (2024) Vol. 13, Iss. 7
Open Access
Metagenome quality metrics and taxonomical annotation visualization through the integration of MAGFlow and BIgMAG
Jeferyd Yepes-García, Laurent Falquet
F1000Research (2024) Vol. 13, pp. 640-640
Open Access
Metagenome quality metrics and taxonomical annotation visualization through the integration of MAGFlow and BIgMAG
Jeferyd Yepes-García, Laurent Falquet
F1000Research (2024) Vol. 13, pp. 640-640
Open Access
Simple, reference-independent assessment to empirically guide correction and polishing of hybrid microbial community metagenomic assembly
Garrett J. Smith, Theo A. van Alen, Maartje A. H. J. van Kessel, et al.
PeerJ (2024) Vol. 12, pp. e18132-e18132
Open Access
Microbial communities associated with marine sponges from diverse geographic locations harbor biosynthetic novelty
Vincent V. Nowak, Peng Hou, Jeremy G. Owen
Applied and Environmental Microbiology (2024)
Closed Access
Nanopore Sequencing Allows Recovery of High-Quality Completely Closed Genomes of All Cronobacter Species from Powdered Infant Formula Overnight Enrichments
Narjol González‐Escalona, Hee Jin Kwon, Yi Chen
Microorganisms (2024) Vol. 12, Iss. 12, pp. 2389-2389
Open Access
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