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OpenAlex Citation Counts

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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

Using prototyping to choose a bioinformatics workflow management system
Michael Jackson, Kostas Kavoussanakis, Edward W. Wallace
PLoS Computational Biology (2021) Vol. 17, Iss. 2, pp. e1008622-e1008622
Open Access | Times Cited: 25

Showing 25 citing articles:

Reproducible, scalable, and shareable analysis pipelines with bioinformatics workflow managers
Laura Wratten, Andreas Wilm, Jonathan Göke
Nature Methods (2021) Vol. 18, Iss. 10, pp. 1161-1168
Closed Access | Times Cited: 162
A simple guide to de novo transcriptome assembly and annotation
Venket Raghavan, Louis Kraft, Fantin Mesny, et al.
Briefings in Bioinformatics (2021) Vol. 23, Iss. 2
Open Access | Times Cited: 101
Playbook workflow builder: Interactive construction of bioinformatics workflows
Daniel Clarke, John Erol Evangelista, Zhuorui Xie, et al.
PLoS Computational Biology (2025) Vol. 21, Iss. 4, pp. e1012901-e1012901
Open Access | Times Cited: 1
RNAflow: An Effective and Simple RNA-Seq Differential Gene Expression Pipeline Using Nextflow
Marie Lataretu, Martin Hölzer
Genes (2020) Vol. 11, Iss. 12, pp. 1487-1487
Open Access | Times Cited: 32
Big Data in Gastroenterology Research
Madeline Alizadeh, Natalia Sampaio Moura, Alyssa Schledwitz, et al.
International Journal of Molecular Sciences (2023) Vol. 24, Iss. 3, pp. 2458-2458
Open Access | Times Cited: 10
pyrpipe: a Python package for RNA-Seq workflows
Urminder Singh, Jing Li, Arun S. Seetharam, et al.
NAR Genomics and Bioinformatics (2021) Vol. 3, Iss. 2
Open Access | Times Cited: 17
Nextflow in Bioinformatics: Executors Performance Comparison Using Genomics Data
Viktória Spišaková, Lukáš Hejtmánek, Jakub Hynšt
Future Generation Computer Systems (2023) Vol. 142, pp. 328-339
Open Access | Times Cited: 6
Metaphor—A workflow for streamlined assembly and binning of metagenomes
Vinícius Salazar, Babak Shaban, Maria del Mar Quiroga, et al.
GigaScience (2022) Vol. 12
Open Access | Times Cited: 10
Design considerations for workflow management systems use in production genomics research and the clinic
Azza E. Ahmed, Joshua Allen, Tajesvi Bhat, et al.
Scientific Reports (2021) Vol. 11, Iss. 1
Open Access | Times Cited: 12
Reproducible Bioinformatics Analysis Workflows for Detecting IGH Gene Fusions in B-Cell Acute Lymphoblastic Leukaemia Patients
Ashlee Thomson, Jacqueline Rehn, Susan L. Heatley, et al.
Cancers (2023) Vol. 15, Iss. 19, pp. 4731-4731
Open Access | Times Cited: 5
riboviz 2: a flexible and robust ribosome profiling data analysis and visualization workflow
Alexander L. Cope, Felicity Anderson, John Favate, et al.
Bioinformatics (2022) Vol. 38, Iss. 8, pp. 2358-2360
Open Access | Times Cited: 8
polishCLR: A Nextflow Workflow for Polishing PacBio CLR Genome Assemblies
Jennifer Chang, Amanda R. Stahlke, Sivanandan Chudalayandi, et al.
Genome Biology and Evolution (2023) Vol. 15, Iss. 3
Open Access | Times Cited: 4
Design considerations for workflow management systems use in production genomics research and the clinic
Azza E. Ahmed, Joshua Allen, Tajesvi Bhat, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2021)
Open Access | Times Cited: 5
Tools and applications for integrative analysis of DNA methylation in social insects
Claire Morandin, Volker Brendel
Molecular Ecology Resources (2021) Vol. 22, Iss. 4, pp. 1656-1674
Open Access | Times Cited: 4
minute: A MINUTE-ChIP data analysis workflow
Carmen Navarro, Marcel Martin, Simon J. Elsässer
bioRxiv (Cold Spring Harbor Laboratory) (2022)
Open Access | Times Cited: 3
A Drug Repurposing Pipeline Based on Bladder Cancer Integrated Proteotranscriptomics Signatures
Marika Mokou, Shaman Narayanasamy, Rafael Stroggilos, et al.
Methods in molecular biology (2023), pp. 59-99
Closed Access | Times Cited: 1
RUNNING A WORKFLOW WITHOUT WORKFLOWS: A BASIC ALGORITHM FOR DYNAMICALLY CONSTRUCTING AND TRAVERSING AN IMPLIED DIRECTED ACYCLIC GRAPH IN A NON-DETERMINISTIC ENVIRONMENT
Fedir Smilianets, Oleksii Finogenov
Informatyka Automatyka Pomiary w Gospodarce i Ochronie Środowiska (2024) Vol. 14, Iss. 1, pp. 115-118
Open Access
Cargo Delivery web-based Application with Ant Colony Optimization Algorithm for Shortest Route search: A Case Study in the Die Cutting Industry
Jansen Wiratama, Santo Fernandi Wijaya, Idris Tandika, et al.
Jurnal Teknologi dan Manajemen Informatika (2024) Vol. 10, Iss. 1, pp. 24-35
Open Access
“polishCLR: a Nextflow workflow for polishing PacBio CLR genome assemblies”
Jennifer Chang, Amanda R. Stahlke, Sivanandan Chudalayandi, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2022)
Open Access | Times Cited: 2
Tools and applications for integrative analysis of DNA methylation in social insects
Claire Morandin, Volker Brendel
bioRxiv (Cold Spring Harbor Laboratory) (2021)
Open Access | Times Cited: 2
Metaphor - A workflow for streamlined assembly and binning of metagenomes
Vinícius Salazar, Babak Shaban, Maria del Mar Quiroga, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access
Development of Web-based School Uniforms order Application in a Private School with Prototyping Model
Jansen Wiratama, Samuel Ady Sanjaya, Hari Santoso, et al.
International Journal Of Science Technology & Management (2023) Vol. 4, Iss. 6, pp. 1612-1618
Open Access
Geniac: Automatic Configuration GENerator and Installer for nextflow pipelines
Fabrice Allain, Julien Roméjon, Philippe La Rosa, et al.
Open Research Europe (2022) Vol. 1, pp. 76-76
Open Access
riboviz 2: A flexible and robust ribosome profiling data analysis and visualization workflow
Alexander L. Cope, Felicity Anderson, John Favate, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2021)
Open Access
Geniac: Automatic Configuration GENerator and Installer for nextflow pipelines
Fabrice Allain, Julien Roméjon, Philippe La Rosa, et al.
Open Research Europe (2021) Vol. 1, pp. 76-76
Open Access
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