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OpenAlex Citation Counts

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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

Online analysis of microendoscopic 1-photon calcium imaging data streams
Johannes Friedrich, Andrea Giovannucci, Eftychios A. Pnevmatikakis
PLoS Computational Biology (2021) Vol. 17, Iss. 1, pp. e1008565-e1008565
Open Access | Times Cited: 35

Showing 1-25 of 35 citing articles:

Natural and Artificial Intelligence: A brief introduction to the interplay between AI and neuroscience research
Tom Macpherson, Anne K. Churchland, Terry Sejnowski, et al.
Neural Networks (2021) Vol. 144, pp. 603-613
Open Access | Times Cited: 93
Minian, an open-source miniscope analysis pipeline
Zhe Dong, William Mau, Yu Feng, et al.
eLife (2022) Vol. 11
Open Access | Times Cited: 41
Multiregion neuronal activity: the forest and the trees
Timothy A. Machado, Isaac Kauvar, Karl Deisseroth
Nature reviews. Neuroscience (2022) Vol. 23, Iss. 11, pp. 683-704
Open Access | Times Cited: 36
A perspective on astrocyte regulation of neural circuit function and animal behavior
Johannes Hirrlinger, Axel Nimmerjahn
Glia (2022) Vol. 70, Iss. 8, pp. 1554-1580
Open Access | Times Cited: 35
Rapid detection of neurons in widefield calcium imaging datasets after training with synthetic data
Yuanlong Zhang, Guoxun Zhang, Xiaofei Han, et al.
Nature Methods (2023) Vol. 20, Iss. 5, pp. 747-754
Open Access | Times Cited: 28
The Impact of Optical Undersampling on the Ca2+ Signal Resolution in Ca2+ Imaging of Spontaneous Neuronal Activity
Katarina Miličević, Violetta O. Ivanova, Thomas J. Brazil, et al.
Journal of Integrative Neuroscience (2025) Vol. 24, Iss. 1
Open Access
FIOLA: an accelerated pipeline for fluorescence imaging online analysis
Changjia Cai, Cynthia Dong, Johannes Friedrich, et al.
Nature Methods (2023) Vol. 20, Iss. 9, pp. 1417-1425
Open Access | Times Cited: 10
A hardware system for real-time decoding of in vivo calcium imaging data
Zhe Chen, Garrett J. Blair, Changliang Guo, et al.
eLife (2023) Vol. 12
Open Access | Times Cited: 9
A cholinergic circuit that relieves pain despite opioid tolerance
Shivang Sullere, Alissa Kunczt, Daniel S. McGehee
Neuron (2023) Vol. 111, Iss. 21, pp. 3414-3434.e15
Open Access | Times Cited: 9
Functional ultrasound imaging of the human spinal cord
Kofi Agyeman, David Lee, Jonathan J. Russin, et al.
Neuron (2024) Vol. 112, Iss. 10, pp. 1710-1722.e3
Open Access | Times Cited: 2
FPGA-Based In-Vivo Calcium Image Decoding for Closed-Loop Feedback Applications
Zhe Chen, Garrett J. Blair, Chengdi Cao, et al.
IEEE Transactions on Biomedical Circuits and Systems (2023) Vol. 17, Iss. 2, pp. 169-179
Open Access | Times Cited: 5
Theta-frequency medial septal nucleus deep brain stimulation increases neurovascular activity in MK-801-treated mice
Lindsey Crown, Kofi Agyeman, Wooseong Choi, et al.
Frontiers in Neuroscience (2024) Vol. 18
Open Access | Times Cited: 1
New imaging instrument in animal models: Two‐photon miniature microscope and large field of view miniature microscope for freely behaving animals
Changliang Guo, Aimin Wang, Heping Cheng, et al.
Journal of Neurochemistry (2022) Vol. 164, Iss. 3, pp. 270-283
Closed Access | Times Cited: 7
Minian an Open-source Miniscope Analysis Pipeline
Zhe Dong, William Mau, Yu Feng, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2021)
Open Access | Times Cited: 9
Decontaminate Traces From Fluorescence Calcium Imaging Videos Using Targeted Non-negative Matrix Factorization
Yijun Bao, Emily Redington, Agnim Agarwal, et al.
Frontiers in Neuroscience (2022) Vol. 15
Open Access | Times Cited: 6
An Open-Source Real-Time Motion Correction Plug-In for Single-Photon Calcium Imaging of Head-Mounted Microscopy
Mingkang Li, Changhao Liu, Xin Cui, et al.
Frontiers in Neural Circuits (2022) Vol. 16
Open Access | Times Cited: 6
Developments from Bulk Optogenetics to Single-Cell Strategies to Dissect the Neural Circuits that Underlie Aberrant Motivational States
Jose Rodríguez-Romaguera, Vijay Mohan K. Namboodiri, Marcus L. Basiri, et al.
Cold Spring Harbor Perspectives in Medicine (2020) Vol. 12, Iss. 3, pp. a039792-a039792
Open Access | Times Cited: 8
Development of an Ergonomic User Interface Design of Calcium Imaging Processing System
Hayoung Jung, Xin Cui, Ha Lim Kim, et al.
Applied Sciences (2022) Vol. 12, Iss. 4, pp. 1877-1877
Open Access | Times Cited: 4
Efficient Kernels for Real-Time Position Decoding from In Vivo Calcium Images
Zhe Chen, Jim Zhou, Garrett J. Blair, et al.
2022 IEEE International Symposium on Circuits and Systems (ISCAS) (2022), pp. 1872-1876
Closed Access | Times Cited: 4
Human spinal cord activation during filling and emptying of the bladder
Kofi Agyeman, David Lee, Aidin Abedi, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access
On Optimizing Miniscope Data Analysis with Simulated Data: A Study of Parameter Optimization in the Minian Analysis Pipeline
А. И. Ерофеев, Mikhail Petrushan, Larisa V. Lysenko, et al.
Neuroscience and Behavioral Physiology (2024) Vol. 54, Iss. 2, pp. 251-262
Closed Access
Fluorescence microscopy: backbone of modern biomedical research
Andrey Andreev, Evgenia V. Azarova, Jeremy Delahanty
Elsevier eBooks (2024), pp. 51-92
Closed Access
Real-Time Ultra-Large-Scale Imaging with High-Resolution Microscopy
Qionghai Dai, Hao Xie, Jiamin Wu
Neuromethods (2024), pp. 51-72
Closed Access
Continuous Prediction of Mice Lever-Pressing Kinematic Parameters by Background Removed Single-photon Calcium Images
Mingkang Li, Ruixue Wang, Guihua Wan, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access
Open-Source Software for Real-time Calcium Imaging and Synchronized Neuron Firing Detection
M. Taniguchi, Taro Tezuka, Pablo Vergara, et al.
2021 43rd Annual International Conference of the IEEE Engineering in Medicine & Biology Society (EMBC) (2021), pp. 2997-3003
Open Access | Times Cited: 5
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