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OpenAlex Citation Counts

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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

Revealing Atomic-Level Mechanisms of Protein Allostery with Molecular Dynamics Simulations
Samuel Hertig, Naomi R. Latorraca, Ron O. Dror
PLoS Computational Biology (2016) Vol. 12, Iss. 6, pp. e1004746-e1004746
Open Access | Times Cited: 105

Showing 1-25 of 105 citing articles:

Molecular Dynamics Simulation for All
Scott A. Hollingsworth, Ron O. Dror
Neuron (2018) Vol. 99, Iss. 6, pp. 1129-1143
Open Access | Times Cited: 1935
GPCR Dynamics: Structures in Motion
Naomi R. Latorraca, AJ Venkatakrishnan, Ron O. Dror
Chemical Reviews (2016) Vol. 117, Iss. 1, pp. 139-155
Open Access | Times Cited: 677
Allostery: An Overview of Its History, Concepts, Methods, and Applications
Jin Liu, Ruth Nussinov
PLoS Computational Biology (2016) Vol. 12, Iss. 6, pp. e1004966-e1004966
Open Access | Times Cited: 247
Allosteric Modulator Discovery: From Serendipity to Structure-Based Design
Shaoyong Lu, Xinheng He, Duan Ni, et al.
Journal of Medicinal Chemistry (2019) Vol. 62, Iss. 14, pp. 6405-6421
Closed Access | Times Cited: 149
G protein-coupled receptors (GPCRs): advances in structures, mechanisms and drug discovery
Mingyang Zhang, Ting Chen, Xun Lu, et al.
Signal Transduction and Targeted Therapy (2024) Vol. 9, Iss. 1
Open Access | Times Cited: 104
Molecular Mechanism for the Allosteric Inhibition of the Human Serotonin Transporter by Antidepressant Escitalopram
Weiwei Xue, Tingting Fu, Shengzhe Deng, et al.
ACS Chemical Neuroscience (2022) Vol. 13, Iss. 3, pp. 340-351
Closed Access | Times Cited: 94
Application of molecular dynamics simulation in biomedicine
Xiaodong Wu, Li‐Yan Xu, En‐Min Li, et al.
Chemical Biology & Drug Design (2022) Vol. 99, Iss. 5, pp. 789-800
Closed Access | Times Cited: 80
Perspectives on Computational Enzyme Modeling: From Mechanisms to Design and Drug Development
Kwangho Nam, Yihan Shao, Dan Thomas Major, et al.
ACS Omega (2024)
Open Access | Times Cited: 22
Systems protobiology: origin of life in lipid catalytic networks
Doron Lancet, Raphael Zidovetzki, Omer Markovitch
Journal of The Royal Society Interface (2018) Vol. 15, Iss. 144, pp. 20180159-20180159
Open Access | Times Cited: 161
Membrane proteins structures: A review on computational modeling tools
José Guilherme de Almeida, António J. Preto, Panagiotis I. Koukos, et al.
Biochimica et Biophysica Acta (BBA) - Biomembranes (2017) Vol. 1859, Iss. 10, pp. 2021-2039
Open Access | Times Cited: 95
An optimal distance cutoff for contact-based Protein Structure Networks using side-chain centers of mass
Juan Salamanca Viloria, Maria Francesca Allega, Matteo Lambrughi, et al.
Scientific Reports (2017) Vol. 7, Iss. 1
Open Access | Times Cited: 93
Integrated Computational Approaches and Tools for Allosteric Drug Discovery
Olivier Sheik Amamuddy, Wayde Veldman, Colleen Varaidzo Manyumwa, et al.
International Journal of Molecular Sciences (2020) Vol. 21, Iss. 3, pp. 847-847
Open Access | Times Cited: 91
On the perturbation nature of allostery: sites, mutations, and signal modulation
Enrico Guarnera, Igor N. Berezovsky
Current Opinion in Structural Biology (2018) Vol. 56, pp. 18-27
Closed Access | Times Cited: 87
Engineering and application of a biosensor with focused ligand specificity
Dennis Della Corte, Hugo L. van Beek, Falk Syberg, et al.
Nature Communications (2020) Vol. 11, Iss. 1
Open Access | Times Cited: 86
Molecular Dynamics Simulations: Concept, Methods, and Applications
Mohammad Sufian Badar, Shazmeen Shamsi, Jawed Ahmed, et al.
Integrated science (2022), pp. 131-151
Closed Access | Times Cited: 60
Allosteric Regulation at the Crossroads of New Technologies: Multiscale Modeling, Networks, and Machine Learning
Gennady M. Verkhivker, Steve Agajanian, Guang Hu, et al.
Frontiers in Molecular Biosciences (2020) Vol. 7
Open Access | Times Cited: 66
Recent Advances and Applications of Molecular Docking to G Protein-Coupled Receptors
Damian Bartuzi, Agnieszka A. Kaczor, Katarzyna M. Targowska‐Duda, et al.
Molecules (2017) Vol. 22, Iss. 2, pp. 340-340
Open Access | Times Cited: 62
Engineering Stability, Viscosity, and Immunogenicity of Antibodies by Computational Design
Daisuke Kuroda, Kouhei Tsumoto
Journal of Pharmaceutical Sciences (2020) Vol. 109, Iss. 5, pp. 1631-1651
Open Access | Times Cited: 50
Emerging Methods and Applications to Decrypt Allostery in Proteins and Nucleic Acids
Pablo R. Arantes, Amun C. Patel, Giulia Palermo
Journal of Molecular Biology (2022) Vol. 434, Iss. 17, pp. 167518-167518
Open Access | Times Cited: 29
Structural basis of dimerization of chemokine receptors CCR5 and CXCR4
Daniele Di Marino, Paolo Conflitti, Stefano Motta, et al.
Nature Communications (2023) Vol. 14, Iss. 1
Open Access | Times Cited: 16
Design of Elastic Networks with Evolutionary Optimized Long-Range Communication as Mechanical Models of Allosteric Proteins
Holger Flechsig
Biophysical Journal (2017) Vol. 113, Iss. 3, pp. 558-571
Open Access | Times Cited: 57
Atomistic Modeling of the ABL Kinase Regulation by Allosteric Modulators Using Structural Perturbation Analysis and Community-Based Network Reconstruction of Allosteric Communications
Lindy Astl, Gennady M. Verkhivker
Journal of Chemical Theory and Computation (2019) Vol. 15, Iss. 5, pp. 3362-3380
Closed Access | Times Cited: 49
How Do Molecular Dynamics Data Complement Static Structural Data of GPCRs
Mariona Torrens‐Fontanals, Tomasz Maciej Stępniewski, David Aranda-García, et al.
International Journal of Molecular Sciences (2020) Vol. 21, Iss. 16, pp. 5933-5933
Open Access | Times Cited: 45
Visualizing agonist-induced M2 receptor activation regulated by aromatic ring dynamics
Zhou Gong, Xu Zhang, Maili Liu, et al.
Proceedings of the National Academy of Sciences (2025) Vol. 122, Iss. 10
Open Access
Protein function machinery: from basic structural units to modulation of activity
Igor N. Berezovsky, Enrico Guarnera, Zejun Zheng, et al.
Current Opinion in Structural Biology (2016) Vol. 42, pp. 67-74
Closed Access | Times Cited: 46
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