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OpenAlex Citation Counts

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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

OrthoSNAP: A tree splitting and pruning algorithm for retrieving single-copy orthologs from gene family trees
Jacob L. Steenwyk, Dayna C. Goltz, Thomas J. Buida, et al.
PLoS Biology (2022) Vol. 20, Iss. 10, pp. e3001827-e3001827
Open Access | Times Cited: 26

Showing 1-25 of 26 citing articles:

Incongruence in the phylogenomics era
Jacob L. Steenwyk, Yuanning Li, Xiaofan Zhou, et al.
Nature Reviews Genetics (2023) Vol. 24, Iss. 12, pp. 834-850
Closed Access | Times Cited: 99
The promise and pitfalls of synteny in phylogenomics
Jacob L. Steenwyk, Nicole King
PLoS Biology (2024) Vol. 22, Iss. 5, pp. e3002632-e3002632
Open Access | Times Cited: 15
Annelid Comparative Genomics and the Evolution of Massive Lineage-specific Genome Rearrangement in Bilaterians
Thomas D. Lewin, Isabel Jiah-Yih Liao, Yi‐Jyun Luo
Molecular Biology and Evolution (2024) Vol. 41, Iss. 9
Open Access | Times Cited: 9
Whole-genome analyses converge to support the Hemirotifera hypothesis within Syndermata (Gnathifera)
Alexandros Vasilikopoulos, Holger Herlyn, Diego Fontaneto, et al.
Hydrobiologia (2024) Vol. 851, Iss. 12-13, pp. 2795-2826
Closed Access | Times Cited: 6
CryptoCEN: A Co-Expression Network for Cryptococcus neoformans reveals novel proteins involved in DNA damage repair
Matthew J. O’Meara, Jackson Rapala, Connie B. Nichols, et al.
PLoS Genetics (2024) Vol. 20, Iss. 2, pp. e1011158-e1011158
Open Access | Times Cited: 6
BioKIT: a versatile toolkit for processing and analyzing diverse types of sequence data
Jacob L. Steenwyk, Thomas J. Buida, Carla Gonçalves, et al.
Genetics (2022) Vol. 221, Iss. 3
Open Access | Times Cited: 27
Diverse signatures of convergent evolution in cactus-associated yeasts
Carla Gonçalves, Marie‐Claire Harrison, Jacob L. Steenwyk, et al.
PLoS Biology (2024) Vol. 22, Iss. 9, pp. e3002832-e3002832
Open Access | Times Cited: 4
Brachiopod genome unveils the evolution of the BMP–Chordin network in bilaterian body patterning
Thomas D. Lewin, Keisuke Shimizu, Isabel Jiah-Yih Liao, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 3
The genomic and cellular basis of biosynthetic innovation in rove beetles
Sheila A. Kitchen, Thomas H. Naragon, Adrian Brückner, et al.
Cell (2024) Vol. 187, Iss. 14, pp. 3563-3584.e26
Open Access | Times Cited: 3
Comparative transcriptomics in ferns reveals key innovations and divergent evolution of secondary cell wall
Zahin Mohd Ali, Qiao Wen Tan, Peng Ken Lim, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 3
A taxon-rich and genome-scale phylogeny of Opisthokonta
Hongyue Liu, Jacob L. Steenwyk, Xiaofan Zhou, et al.
PLoS Biology (2024) Vol. 22, Iss. 9, pp. e3002794-e3002794
Open Access | Times Cited: 3
A genome-scale Opisthokonta tree of life: toward phylogenomic resolution of ancient divergences
Hongyue Liu, Jacob L. Steenwyk, Xiaofan Zhou, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access | Times Cited: 7
Annelid comparative genomics and the evolution of massive lineage-specific genome rearrangement in bilaterians
Thomas D. Lewin, Isabel Jiah-Yih Liao, Yi‐Jyun Luo
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 2
Phylogenomic Inference, Divergence-Time Calibration, and Methods for Characterizing Reticulate Evolution
Saelin Bjornson, Nathan S. Upham, Heroen Verbruggen, et al.
(2023)
Open Access | Times Cited: 6
Diverse signatures of convergent evolution in cacti-associated yeasts
Carla Gonçalves, Marie‐Claire Harrison, Jacob L. Steenwyk, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access | Times Cited: 5
Benchmarking gene set of gymnosperms for assessing genome and annotation completeness in BUSCO
Junjie Wu, Yuwei Han, Chen‐Feng Lin, et al.
Horticulture Research (2023) Vol. 10, Iss. 9
Open Access | Times Cited: 4
Lacewing‐specific Universal Single Copy Orthologs designed towards resolution of backbone phylogeny of Neuropterida
Yan Lai, Shiyu Du, H. Li, et al.
Systematic Entomology (2024)
Closed Access | Times Cited: 1
PhyKIT: A Multitool for Phylogenomics
Jacob L. Steenwyk, Gemma I. Martínez‐Redondo, Thomas J. Buida, et al.
Current Protocols (2024) Vol. 4, Iss. 11
Open Access | Times Cited: 1
Comparative Population Transcriptomics Provide New Insight into the Evolutionary History and Adaptive Potential of World Ocean Krill
Marvin Choquet, Felix Lenner, Arianna Cocco, et al.
Molecular Biology and Evolution (2023) Vol. 40, Iss. 11
Open Access | Times Cited: 3
Orthoflow: phylogenomic analysis and diagnostics with one command
Robert Turnbull, Jacob L. Steenwyk, Simon J. Mutch, et al.
Research Square (Research Square) (2023)
Open Access | Times Cited: 2
Host and venom evolution in parasitoid wasps: does independently adapting to the same host shape the evolution of the venom gland transcriptome?
Yi Yang, Shan Xiao, Xianxin Zhao, et al.
BMC Biology (2024) Vol. 22, Iss. 1
Open Access
Developmental correspondence of juvenile stages across the locust, harlequin ladybird, and diamondback moth
Hang Zhou, Runguo Shu, Chaowei Zhang, et al.
iScience (2024) Vol. 27, Iss. 10, pp. 110898-110898
Open Access
RCVT: a novel diagnostic to quantify compositional biases among taxa for phylogenomics
Jacob L. Steenwyk, Thomas J. Buida
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access
OrthoFlow: phylogenomic analysis and diagnostics with one command
Robert Turnbull, Jacob L. Steenwyk, Simon J. Mutch, et al.
Research Square (Research Square) (2023)
Open Access | Times Cited: 1
Comparative population genomics provide new insight into the evolutionary history and adaptive potential of World Ocean krill
Marvin Choquet, Felix Lenner, Arianna Cocco, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access
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