OpenAlex Citation Counts

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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

DeepARG: a deep learning approach for predicting antibiotic resistance genes from metagenomic data
Gustavo Arango-Argoty, Emily Garner, Amy Pruden, et al.
Microbiome (2018) Vol. 6, Iss. 1
Open Access | Times Cited: 632

Showing 1-25 of 632 citing articles:

Drug combinations: a strategy to extend the life of antibiotics in the 21st century
Mike Tyers, Gerard D. Wright
Nature Reviews Microbiology (2019) Vol. 17, Iss. 3, pp. 141-155
Closed Access | Times Cited: 670

Sequencing-based methods and resources to study antimicrobial resistance
Manish Boolchandani, Alaric W. D’Souza, Gautam Dantas
Nature Reviews Genetics (2019)
Open Access | Times Cited: 453

Using Genomics to Track Global Antimicrobial Resistance
René S. Hendriksen, Valeria Bortolaia, Heather Tate, et al.
Frontiers in Public Health (2019) Vol. 7
Open Access | Times Cited: 378

Compositional and functional differences of the mucosal microbiota along the intestine of healthy individuals
Stefania Vaga, Sunjae Lee, Boyang Ji, et al.
Scientific Reports (2020) Vol. 10, Iss. 1
Open Access | Times Cited: 355

Surveillance of antimicrobial resistance in low- and middle-income countries: a scattered picture
Katia Iskandar, Laurent Molinier, Souheil Hallit, et al.
Antimicrobial Resistance and Infection Control (2021) Vol. 10, Iss. 1
Open Access | Times Cited: 274

Innovative and rapid antimicrobial susceptibility testing systems
Alex van Belkum, Carey‐Ann D. Burnham, John W. A. Rossen, et al.
Nature Reviews Microbiology (2020) Vol. 18, Iss. 5, pp. 299-311
Open Access | Times Cited: 271

mNGS in clinical microbiology laboratories: on the road to maturity
Dongsheng Han, Ziyang Li, Rui Li, et al.
Critical Reviews in Microbiology (2019) Vol. 45, Iss. 5-6, pp. 668-685
Closed Access | Times Cited: 262

Applications of Machine Learning in Human Microbiome Studies: A Review on Feature Selection, Biomarker Identification, Disease Prediction and Treatment
Laura Judith Marcos-Zambrano, Kanita Karađuzović-Hadžiabdić, Tatjana Lončar-Turukalo, et al.
Frontiers in Microbiology (2021) Vol. 12
Open Access | Times Cited: 245

Monitoring antibiotic resistance genes in wastewater treatment: Current strategies and future challenges
Quỳnh Anh Nguyễn, Hang P. Vu, Luong N. Nguyen, et al.
The Science of The Total Environment (2021) Vol. 783, pp. 146964-146964
Open Access | Times Cited: 235

Distribution of antibiotic resistance genes in the environment
Mei Zhuang, Yigal Achmon, Yuping Cao, et al.
Environmental Pollution (2021) Vol. 285, pp. 117402-117402
Open Access | Times Cited: 233

Population genomics of bacterial host adaptation
Samuel K. Sheppard, David S. Guttman, J. Ross Fitzgerald
Nature Reviews Genetics (2018) Vol. 19, Iss. 9, pp. 549-565
Closed Access | Times Cited: 221

Current progress and open challenges for applying deep learning across the biosciences
Nicolae Sapoval, Amirali Aghazadeh, Michael Nute, et al.
Nature Communications (2022) Vol. 13, Iss. 1
Open Access | Times Cited: 218

A conceptual framework for the environmental surveillance of antibiotics and antibiotic resistance
P.M.C. Huijbers, Carl‐Fredrik Flach, D. G. Joakim Larsson
Environment International (2019) Vol. 130, pp. 104880-104880
Open Access | Times Cited: 188

Advances in Metagenomics and Its Application in Environmental Microorganisms
Lu Zhang, Fengxin Chen, Zhan Zeng, et al.
Frontiers in Microbiology (2021) Vol. 12
Open Access | Times Cited: 173

Fate and toxicity of pharmaceuticals in water environment: An insight on their occurrence in South Asia
Hudda Khaleeq Khan, Muhammad Yasir Abdur Rehman, Riffat Naseem Malik
Journal of Environmental Management (2020) Vol. 271, pp. 111030-111030
Closed Access | Times Cited: 172

Prediction of the intestinal resistome by a three-dimensional structure-based method
Étienne Ruppé, Amine Ghozlane, Julien Tap, et al.
Nature Microbiology (2018) Vol. 4, Iss. 1, pp. 112-123
Open Access | Times Cited: 167

Antimicrobial Resistance Monitoring of Water Environments: A Framework for Standardized Methods and Quality Control
Krista Liguori, Ishi Keenum, Benjamin C. Davis, et al.
Environmental Science & Technology (2022) Vol. 56, Iss. 13, pp. 9149-9160
Open Access | Times Cited: 167

Water and sanitation: an essential battlefront in the war on antimicrobial resistance
Helmut Bürgmann, Dominic Frigon, William H. Gaze, et al.
FEMS Microbiology Ecology (2018) Vol. 94, Iss. 9
Open Access | Times Cited: 166

Metagenomics-enabled microbial surveillance
Karrie Kwan Ki Ko, Kern Rei Chng, Niranjan Nagarajan
Nature Microbiology (2022) Vol. 7, Iss. 4, pp. 486-496
Open Access | Times Cited: 160

Probiotics impact the antibiotic resistance gene reservoir along the human GI tract in a person-specific and antibiotic-dependent manner
Emmanuel Montassier, Rafael Valdés‐Mas, Éric Batard, et al.
Nature Microbiology (2021) Vol. 6, Iss. 8, pp. 1043-1054
Open Access | Times Cited: 157

Nanopore sequencing and its application to the study of microbial communities
Laura Ciuffreda, Héctor Rodríguez‐Pérez, Carlos Flores
Computational and Structural Biotechnology Journal (2021) Vol. 19, pp. 1497-1511
Open Access | Times Cited: 154

Accelerating antibiotic discovery through artificial intelligence
Marcelo C. R. Melo, Jacqueline R. M. A. Maasch, César de la Fuente‐Núñez
Communications Biology (2021) Vol. 4, Iss. 1
Open Access | Times Cited: 151

Applications of Machine Learning to the Problem of Antimicrobial Resistance: an Emerging Model for Translational Research
Melis N. Anahtar, Jason H. Yang, Sanjat Kanjilal
Journal of Clinical Microbiology (2021) Vol. 59, Iss. 7
Open Access | Times Cited: 140

PathoFact: a pipeline for the prediction of virulence factors and antimicrobial resistance genes in metagenomic data
Laura de Nies, Sara Lopes, Susheel Bhanu Busi, et al.
Microbiome (2021) Vol. 9, Iss. 1
Open Access | Times Cited: 129

Removal of antibiotic resistance genes from swine wastewater by membrane filtration treatment
Chengyu Liang, Wei Dong, Siying Zhang, et al.
Ecotoxicology and Environmental Safety (2021) Vol. 210, pp. 111885-111885
Open Access | Times Cited: 116

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