
OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!
If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.
Requested Article:
CHESS 3: an improved, comprehensive catalog of human genes and transcripts based on large-scale expression data, phylogenetic analysis, and protein structure
Ales Varabyou, Markus J. Sommer, Beril Erdogdu, et al.
Genome biology (2023) Vol. 24, Iss. 1
Open Access | Times Cited: 21
Ales Varabyou, Markus J. Sommer, Beril Erdogdu, et al.
Genome biology (2023) Vol. 24, Iss. 1
Open Access | Times Cited: 21
Showing 21 citing articles:
Developmental isoform diversity in the human neocortex informs neuropsychiatric risk mechanisms
Ashok Patowary, Pan Zhang, Connor Jops, et al.
Science (2024) Vol. 384, Iss. 6698
Closed Access | Times Cited: 21
Ashok Patowary, Pan Zhang, Connor Jops, et al.
Science (2024) Vol. 384, Iss. 6698
Closed Access | Times Cited: 21
The hidden impact of in-source fragmentation in metabolic and chemical mass spectrometry data interpretation
Martin Giera, Aries Aisporna, Winnie Uritboonthai, et al.
Nature Metabolism (2024) Vol. 6, Iss. 9, pp. 1647-1648
Closed Access | Times Cited: 13
Martin Giera, Aries Aisporna, Winnie Uritboonthai, et al.
Nature Metabolism (2024) Vol. 6, Iss. 9, pp. 1647-1648
Closed Access | Times Cited: 13
PON-P3: Accurate Prediction of Pathogenicity of Amino Acid Substitutions
Muhammad Kabir, Saeed Ahmed, Haoyang Zhang, et al.
International Journal of Molecular Sciences (2025) Vol. 26, Iss. 5, pp. 2004-2004
Open Access
Muhammad Kabir, Saeed Ahmed, Haoyang Zhang, et al.
International Journal of Molecular Sciences (2025) Vol. 26, Iss. 5, pp. 2004-2004
Open Access
Investigating open reading frames in known and novel transcripts using ORFanage
Ales Varabyou, Beril Erdogdu, Steven L. Salzberg, et al.
Nature Computational Science (2023) Vol. 3, Iss. 8, pp. 700-708
Open Access | Times Cited: 10
Ales Varabyou, Beril Erdogdu, Steven L. Salzberg, et al.
Nature Computational Science (2023) Vol. 3, Iss. 8, pp. 700-708
Open Access | Times Cited: 10
Splam: a deep-learning-based splice site predictor that improves spliced alignments
Kuan-Hao Chao, Alan Mao, Steven L. Salzberg, et al.
Genome biology (2024) Vol. 25, Iss. 1
Open Access | Times Cited: 3
Kuan-Hao Chao, Alan Mao, Steven L. Salzberg, et al.
Genome biology (2024) Vol. 25, Iss. 1
Open Access | Times Cited: 3
GENCODE: massively expanding the lncRNA catalog through capture long-read RNA sequencing
Gazaldeep Kaur, Tamara Perteghella, Sílvia Carbonell Sala, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 3
Gazaldeep Kaur, Tamara Perteghella, Sílvia Carbonell Sala, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 3
Detecting differential transcript usage in complex diseases with SPIT
Beril Erdogdu, Ales Varabyou, Stephanie C. Hicks, et al.
Cell Reports Methods (2024) Vol. 4, Iss. 3, pp. 100736-100736
Open Access | Times Cited: 2
Beril Erdogdu, Ales Varabyou, Stephanie C. Hicks, et al.
Cell Reports Methods (2024) Vol. 4, Iss. 3, pp. 100736-100736
Open Access | Times Cited: 2
Biosurfer for systematic tracking of regulatory mechanisms leading to protein isoform diversity
Mayank Murali, Jamie Saquing, Senbao Lu, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 1
Mayank Murali, Jamie Saquing, Senbao Lu, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 1
Enhancing transcriptome expression quantification through accurate assignment of long RNA sequencing reads with TranSigner
Hyun Joo Ji, Mihaela Pertea
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 1
Hyun Joo Ji, Mihaela Pertea
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 1
Combining DNA and protein alignments to improve genome annotation with LiftOn
Kuan-Hao Chao, Jakob Heinz, Celine Hoh, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 1
Kuan-Hao Chao, Jakob Heinz, Celine Hoh, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 1
Upstream open reading frames may contain hundreds of novel human exons
Hyun Joo Ji, Steven L. Salzberg
PLoS Computational Biology (2024) Vol. 20, Iss. 11, pp. e1012543-e1012543
Open Access | Times Cited: 1
Hyun Joo Ji, Steven L. Salzberg
PLoS Computational Biology (2024) Vol. 20, Iss. 11, pp. e1012543-e1012543
Open Access | Times Cited: 1
Human introns contain conserved tissue-specific cryptic poison exons
Sergey Margasyuk, Antonina Kuznetsova, Lev Zavileyskiy, et al.
NAR Genomics and Bioinformatics (2024) Vol. 6, Iss. 4
Open Access | Times Cited: 1
Sergey Margasyuk, Antonina Kuznetsova, Lev Zavileyskiy, et al.
NAR Genomics and Bioinformatics (2024) Vol. 6, Iss. 4
Open Access | Times Cited: 1
Splam: a deep-learning-based splice site predictor that improves spliced alignments
Kuan-Hao Chao, Alan Mao, Steven L. Salzberg, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access | Times Cited: 4
Kuan-Hao Chao, Alan Mao, Steven L. Salzberg, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access | Times Cited: 4
Investigating Open Reading Frames in Known and Novel Transcripts using ORFanage
Ales Varabyou, Beril Erdogdu, Steven L. Salzberg, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access | Times Cited: 2
Ales Varabyou, Beril Erdogdu, Steven L. Salzberg, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access | Times Cited: 2
Upstream open reading frames may contain hundreds of novel human exons
Hyun Joo Ji, Steven L. Salzberg
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access
Hyun Joo Ji, Steven L. Salzberg
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access
Transcriptomic Insights into the Atrial Fibrillation Susceptibility Locus near the MYOZ1 and SYNPO2L Genes
Sojin Y. Wass, Han Sun, Gregory Tchou, et al.
International Journal of Molecular Sciences (2024) Vol. 25, Iss. 19, pp. 10309-10309
Open Access
Sojin Y. Wass, Han Sun, Gregory Tchou, et al.
International Journal of Molecular Sciences (2024) Vol. 25, Iss. 19, pp. 10309-10309
Open Access
There will always be variants of uncertain significance. Analysis of VUSs
Haoyang Zhang, Muhammad Kabir, Saeed Ahmed, et al.
NAR Genomics and Bioinformatics (2024) Vol. 6, Iss. 4
Open Access
Haoyang Zhang, Muhammad Kabir, Saeed Ahmed, et al.
NAR Genomics and Bioinformatics (2024) Vol. 6, Iss. 4
Open Access
More than 2,500 coding genes in the human reference gene set still have unsettled status
Miguel Maquedano, Daniel Cerdán-Vélez, Michael L. Tress
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access
Miguel Maquedano, Daniel Cerdán-Vélez, Michael L. Tress
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access
EASTR: Identifying and eliminating systematic alignment errors in multi-exon genes
Ida Shinder, Richard Hu, Hyun Joo Ji, et al.
Nature Communications (2023) Vol. 14, Iss. 1
Open Access | Times Cited: 1
Ida Shinder, Richard Hu, Hyun Joo Ji, et al.
Nature Communications (2023) Vol. 14, Iss. 1
Open Access | Times Cited: 1
Quality assessment of splice site annotation based on conservation across multiple species
Ilia Minkin, Steven L. Salzberg
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access | Times Cited: 1
Ilia Minkin, Steven L. Salzberg
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access | Times Cited: 1
Detecting differential transcript usage in complex diseases with SPIT
Beril Erdogdu, Ales Varabyou, Stephanie C. Hicks, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access
Beril Erdogdu, Ales Varabyou, Stephanie C. Hicks, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access