Open Access Helper

OpenAlex Citation Counts

OpenAlex Citations Logo

OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

SPIRAL: integrating and aligning spatially resolved transcriptomics data across different experiments, conditions, and technologies
Tiantian Guo, Zhiyuan Yuan, Yan Pan, et al.
Genome biology (2023) Vol. 24, Iss. 1
Open Access | Times Cited: 25

Showing 25 citing articles:

Benchmarking clustering, alignment, and integration methods for spatial transcriptomics
Yunfei Hu, Manfei Xie, Yikang Li, et al.
Genome biology (2024) Vol. 25, Iss. 1
Open Access | Times Cited: 12
Navigating the landscapes of spatial transcriptomics: How computational methods guide the way
Runze Li, Xu Chen, Xuerui Yang
Wiley Interdisciplinary Reviews - RNA (2024) Vol. 15, Iss. 2
Closed Access | Times Cited: 8
Computational methods for alignment and integration of spatially resolved transcriptomics data
Yuyao Liu, Can Yang
Computational and Structural Biotechnology Journal (2024) Vol. 23, pp. 1094-1105
Open Access | Times Cited: 5
INSTINCT: Multi-sample integration of spatial chromatin accessibility sequencing data via stochastic domain translation
Yuyao Liu, Zhen Li, Xiaoyang Chen, et al.
Nature Communications (2025) Vol. 16, Iss. 1
Open Access
STModule: identifying tissue modules to uncover spatial components and characteristics of transcriptomic landscapes
Ran Wang, Qian Yan, Xiaojing Guo, et al.
Genome Medicine (2025) Vol. 17, Iss. 1
Open Access
Quantitative characterization of cell niches in spatially resolved omics data
Sebastian Birk, Irene Bonafonte-Pardàs, Adib Miraki Feriz, et al.
Nature Genetics (2025)
Open Access
SPARROW reveals microenvironment-zone-specific cell states in healthy and diseased tissues
Peiyao A Zhao, Ruoxin Li, Temi Adewunmi, et al.
Cell Systems (2025) Vol. 16, Iss. 3, pp. 101235-101235
Open Access
haCCA: Multi-module Integrating of spatial transcriptomes and metabolomes.
Luyu Yang, Xiaotian Shen, Jing Xu, et al.
Research Square (Research Square) (2025)
Closed Access
SpaMask: Dual masking graph autoencoder with contrastive learning for spatial transcriptomics
Wenwen Min, Donghai Fang, Jinyu Chen, et al.
PLoS Computational Biology (2025) Vol. 21, Iss. 4, pp. e1012881-e1012881
Open Access
Integrating multiple spatial transcriptomics data using community-enhanced graph contrastive learning
Wei Tu, Lihua Zhang
PLoS Computational Biology (2025) Vol. 21, Iss. 4, pp. e1012948-e1012948
Open Access
Unified integration of spatial transcriptomics across platforms
Eldad Haber, Ajinkya Deshpande, Jian Ma, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2025)
Open Access
stMMR: accurate and robust spatial domain identification from spatially resolved transcriptomics with multi-modal feature representation
Daoliang Zhang, Na Yu, Wenrui Li, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 3
Cross-modality representation and multi-sample integration of spatially resolved omics data
Zhen Li, Xuejian Cui, Xiaoyang Chen, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 2
Benchmarking clustering, alignment, and integration methods for spatial transcriptomics
Yunfei Hu, Yikang Li, Manfei Xie, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 2
CancerSRT: a spatially resolved transcriptomics database for human cancers
Yuying Huo, Jiakang Wang, Chengcheng Liu, et al.
Journal of genetics and genomics/Journal of Genetics and Genomics (2024)
Closed Access | Times Cited: 1
Computational Methods for Image Analysis in Craniofacial Development and Disease
Eddie A. James, Ana J Caetano, Paul T. Sharpe
Journal of Dental Research (2024) Vol. 103, Iss. 13, pp. 1340-1348
Closed Access | Times Cited: 1
BayeSMART: Bayesian clustering of multi-sample spatially resolved transcriptomics data
Yanghong Guo, Bencong Zhu, Chen Tang, et al.
Briefings in Bioinformatics (2024) Vol. 25, Iss. 6
Open Access | Times Cited: 1
INSTINCT: Multi-sample integration of spatial chromatin accessibility sequencing data via stochastic domain translation
Yuyao Liu, Zhen Li, Xiaoyang Chen, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access
Data enhancement in the age of spatial biology
Linbu Liao, Patrick Martin, Hyobin Kim, et al.
Advances in cancer research (2024), pp. 39-70
Closed Access
Decoding spatial transcriptomics: Current trends and future prospects in data analysis methodologies
Runze Li, Xu Chen, Xuerui Yang
Chinese Science Bulletin (Chinese Version) (2024) Vol. 69, Iss. 30, pp. 4415-4431
Closed Access
haCCA: Multi-module Integrating of spatial transcriptomes and metabolomes
Xiaotian Shen, Jing Xu, Chen Zhang, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access
BayeSMART: Bayesian Clustering of Multi-sample Spatially Resolved Transcriptomics Data
Yanghong Guo, Bencong Zhu, Chen Tang, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access
SpaGRA: graph augmentation facilitates domain identification for spatially resolved transcriptomics
Xue Sun, Wei Zhang, Wenrui Li, et al.
Journal of genetics and genomics/Journal of Genetics and Genomics (2024)
Closed Access
stMMR: accurate and robust spatial domain identification from spatially resolved transcriptomics with multimodal feature representation
Daoliang Zhang, Na Yu, Zhiyuan Yuan, et al.
GigaScience (2024) Vol. 13
Open Access
Page 1

Scroll to top