Open Access Helper

OpenAlex Citation Counts

OpenAlex Citations Logo

OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

Identification of cell barcodes from long-read single-cell RNA-seq with BLAZE
Yupei You, Yair D. J. Prawer, Ricardo De Paoli‐Iseppi, et al.
Genome biology (2023) Vol. 24, Iss. 1
Open Access | Times Cited: 100

Showing 1-25 of 100 citing articles:

Predicting RNA-seq coverage from DNA sequence as a unifying model of gene regulation
Johannes Linder, Divyanshi Srivastava, Han Yuan, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access | Times Cited: 48
Long read sequencing on its way to the routine diagnostics of genetic diseases
Giulia Olivucci, Emanuela Iovino, Giovanni Innella, et al.
Frontiers in Genetics (2024) Vol. 15
Open Access | Times Cited: 14
High throughput single cell long-read sequencing analyses of same-cell genotypes and phenotypes in human tumors
Cheng-Kai Shiau, Lina Lu, Rachel E. Kieser, et al.
Nature Communications (2023) Vol. 14, Iss. 1
Open Access | Times Cited: 29
Correcting PCR amplification errors in unique molecular identifiers to generate accurate numbers of sequencing molecules
Jianfeng Sun, Martin Philpott, Danson Loi, et al.
Nature Methods (2024) Vol. 21, Iss. 3, pp. 401-405
Open Access | Times Cited: 11
Engineering of highly active and diverse nuclease enzymes by combining machine learning and ultra-high-throughput screening
Neil Thomas, David Belanger, Chenling Xu, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 8
Advances in single-cell long-read sequencing technologies
Pallavi Gupta, Hannah O’Neill, Ernst J. Wolvetang, et al.
NAR Genomics and Bioinformatics (2024) Vol. 6, Iss. 2
Open Access | Times Cited: 6
Isoform-level discovery, quantification and fusion analysis from single-cell and spatial long-read RNA-seq data with Bambu-Clump
Andre Sim, Min Hao Ling, Ying Chen, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2025)
Open Access
Altered RNA-processing provides a mechanistic framework delineating human sex reversal associated with pathogenic variants in the RNA-helicase DHX37
Maëva Elzaïat, Estelle Talouarn, Somboon Wankanit, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2025)
Open Access
Enhancing single-cell transcriptomics using interposed anchor oligonucleotide sequences
Jianfeng Sun, Martin Philpott, Danson Loi, et al.
Communications Biology (2025) Vol. 8, Iss. 1
Open Access
Personal transcriptome variation is poorly explained by current genomic deep learning models
Connie Huang, Richard W. Shuai, Parth Baokar, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access | Times Cited: 15
From words to complete phrases: insight into single-cell isoforms using short and long reads
Anoushka Joglekar, Careen Foord, Julien Jarroux, et al.
Transcription (2023) Vol. 14, Iss. 3-5, pp. 92-104
Open Access | Times Cited: 14
Single-cell and spatial transcriptomics: Bridging current technologies with long-read sequencing
Chengwei Ulrika Yuan, Fu Xiang Quah, Martin Hemberg
Molecular Aspects of Medicine (2024) Vol. 96, pp. 101255-101255
Closed Access | Times Cited: 5
Interactive visualisation of raw nanopore signal data with Squigualiser
Hiruna Samarakoon, Kisaru Liyanage, James M. Ferguson, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 5
Towards an unbiased characterization of genetic polymorphism
Anna A. Igolkina, Sebastian Vorbrugg, Fernando A. Rabanal, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 5
Advances in long-read single-cell transcriptomics
Pallawi Kumari, Manmeet Kaur, Kiran Dindhoria, et al.
Human Genetics (2024) Vol. 143, Iss. 9-10, pp. 1005-1020
Open Access | Times Cited: 4
High-resolution genomic ancestry reveals mobility in early medieval Europe
Leo Speidel, Marina Silva, Thomas J. Booth, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 3
Flexiplex: a versatile demultiplexer and search tool for omics data
Oliver Cheng, Min Hao Ling, Changqing Wang, et al.
Bioinformatics (2024) Vol. 40, Iss. 3
Open Access | Times Cited: 3
GPN-MSA: an alignment-based DNA language model for genome-wide variant effect prediction
Gonzalo Benegas, Carlos Albors, Alan J. Aw, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access | Times Cited: 10
Med12 cooperates with multiple differentiation signals to enhance embryonic stem cell plasticity
Max Fernkorn, Christian Schröter
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 2
IsoVis – a webserver for visualization and annotation of alternative RNA isoforms
Ching Yin Wan, J. Davis, Manveer Chauhan, et al.
Nucleic Acids Research (2024) Vol. 52, Iss. W1, pp. W341-W347
Open Access | Times Cited: 2
Evaluation of enzyme activity predictions for variants of unknown significance in Arylsulfatase A
Shantanu Jain, Marena Trinidad, Thanh Nguyen, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 2
Interpretingcis-regulatory mechanisms from genomic deep neural networks using surrogate models
E. Seitz, David M. McCandlish, Justin B. Kinney, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access | Times Cited: 7
Robust differential expression testing for single-cell CRISPR screens at low multiplicity of infection
Timothy Barry, Kaishu Mason, Kathryn Roeder, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access | Times Cited: 6
Combining DNA and protein alignments to improve genome annotation with LiftOn
Kuan-Hao Chao, Jakob Heinz, Celine Hoh, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 1
Page 1 - Next Page

Scroll to top