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OpenAlex Citation Counts

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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

The shaky foundations of simulating single-cell RNA sequencing data
Helena L. Crowell, Sarah X. Morillo Leonardo, Charlotte Soneson, et al.
Genome biology (2023) Vol. 24, Iss. 1
Open Access | Times Cited: 22

Showing 22 citing articles:

scDesign3 generates realistic in silico data for multimodal single-cell and spatial omics
Dongyuan Song, Qingyang Wang, Guanao Yan, et al.
Nature Biotechnology (2023) Vol. 42, Iss. 2, pp. 247-252
Closed Access | Times Cited: 73
Systematic comparison of sequencing-based spatial transcriptomic methods
Yue You, Yuting Fu, Lanxiang Li, et al.
Nature Methods (2024) Vol. 21, Iss. 9, pp. 1743-1754
Open Access | Times Cited: 43
A comparison of marker gene selection methods for single-cell RNA sequencing data
Jeffrey M. Pullin, Davis J. McCarthy
Genome biology (2024) Vol. 25, Iss. 1
Open Access | Times Cited: 37
Challenges and best practices in omics benchmarking
Thomas G. Brooks, Nicholas F. Lahens, Antonijo Mrčela, et al.
Nature Reviews Genetics (2024) Vol. 25, Iss. 5, pp. 326-339
Closed Access | Times Cited: 17
GRouNdGAN: GRN-guided simulation of single-cell RNA-seq data using causal generative adversarial networks
Yazdan Zinati, Abdulrahman Takiddeen, Amin Emad
Nature Communications (2024) Vol. 15, Iss. 1
Open Access | Times Cited: 6
Efficient differential expression analysis of large-scale single cell transcriptomics data using dreamlet
Gabriel E. Hoffman, Donghoon Lee, Jaroslav Bendl, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access | Times Cited: 15
scMultiSim: simulation of single-cell multi-omics and spatial data guided by gene regulatory networks and cell–cell interactions
Hechen Li, Ziqi Zhang, Michael Squires, et al.
Nature Methods (2025)
Open Access
scReadSim: a single-cell RNA-seq and ATAC-seq read simulator
Guanao Yan, Dongyuan Song, Jingyi Jessica Li
Nature Communications (2023) Vol. 14, Iss. 1
Open Access | Times Cited: 7
New horizons in the stormy sea of multimodal single-cell data integration
Christopher A. Jackson, Christine Vogel
Molecular Cell (2022) Vol. 82, Iss. 2, pp. 248-259
Open Access | Times Cited: 12
Systematic evaluation with practical guidelines for single-cell and spatially resolved transcriptomics data simulation under multiple scenarios
Hongrui Duo, Yinghong Li, Lan Yang, et al.
Genome biology (2024) Vol. 25, Iss. 1
Open Access | Times Cited: 2
simCAS: an embedding-based method for simulating single-cell chromatin accessibility sequencing data
Chen Li, Xiaoyang Chen, Shengquan Chen, et al.
Bioinformatics (2023) Vol. 39, Iss. 8
Open Access | Times Cited: 5
scMultiSim: simulation of single cell multi-omics and spatial data guided by gene regulatory networks and cell-cell interactions
Xiuwei Zhang, Hechen Li, Ziqi Zhang, et al.
Research Square (Research Square) (2023)
Open Access | Times Cited: 5
demuxSNP: supervised demultiplexing scRNAseq using cell hashing and SNPs
Michael P. Lynch, Yufei Wang, Laurent Gatto, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 1
Limits to the inference of gene regulation from bulk tissue expression data
Eric Ching-Pan Chu, Alexander M. Morin, Paul Pavlidis
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 1
Cytomulate: accurate and efficient simulation of CyTOF data
Yuqiu Yang, Kaiwen Wang, Zeyu Lu, et al.
Genome biology (2023) Vol. 24, Iss. 1
Open Access | Times Cited: 2
Cytomulate: accurate and efficient simulation of CyTOF data
Yuqiu Yang, Kaiwen Wang, Zeyu Lu, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2022)
Open Access | Times Cited: 4
Author Correction: The shaky foundations of simulating single-cell RNA sequencing data
Helena L. Crowell, Sarah X. Morillo Leonardo, Charlotte Soneson, et al.
Genome biology (2024) Vol. 25, Iss. 1
Open Access
Semisynthetic Simulation for Microbiome Data Analysis
Kris Sankaran, Saritha Kodikara, Jingyi Jessica Li, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access
Mcadet: A feature selection method for fine-resolution single-cell RNA-seq data based on multiple correspondence analysis and community detection
Saishi Cui, Sina Nassiri, Issa Zakeri
PLoS Computational Biology (2024) Vol. 20, Iss. 10, pp. e1012560-e1012560
Open Access
demuxSNP: supervised demultiplexing single-cell RNA sequencing using cell hashing and SNPs
Michael P. Lynch, Yufei Wang, Shannan Ho Sui, et al.
GigaScience (2024) Vol. 13
Open Access
Semisynthetic simulation for microbiome data analysis
Kris Sankaran, Saritha Kodikara, Jingyi Jessica Li, et al.
Briefings in Bioinformatics (2024) Vol. 26, Iss. 1
Open Access
Differential detection workflows for multi-sample single-cell RNA-seq data
Jeroen Gilis, Laura Perin, Milan Malfait, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access | Times Cited: 1
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