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OpenAlex Citation Counts

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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

Evaluation of cell-cell interaction methods by integrating single-cell RNA sequencing data with spatial information
Zhaoyang Liu, Dongqing Sun, Chenfei Wang
Genome biology (2022) Vol. 23, Iss. 1
Open Access | Times Cited: 91

Showing 1-25 of 91 citing articles:

CellChat for systematic analysis of cell–cell communication from single-cell transcriptomics
Suoqin Jin, Maksim V. Plikus, Qing Nie
Nature Protocols (2024)
Closed Access | Times Cited: 76
Spatially resolved transcriptomics: a comprehensive review of their technological advances, applications, and challenges
Mengnan Cheng, Yujia Jiang, Jiangshan Xu, et al.
Journal of genetics and genomics/Journal of Genetics and Genomics (2023) Vol. 50, Iss. 9, pp. 625-640
Open Access | Times Cited: 73
A Review of Single-Cell RNA-Seq Annotation, Integration, and Cell–Cell Communication
Changde Cheng, Wenan Chen, Hongjian Jin, et al.
Cells (2023) Vol. 12, Iss. 15, pp. 1970-1970
Open Access | Times Cited: 57
Deep learning applications in single-cell genomics and transcriptomics data analysis
Nafiseh Erfanian, A. Ali Heydari, Adib Miraki Feriz, et al.
Biomedicine & Pharmacotherapy (2023) Vol. 165, pp. 115077-115077
Open Access | Times Cited: 55
The diversification of methods for studying cell–cell interactions and communication
Erick Armingol, Hratch Baghdassarian, Nathan E. Lewis
Nature Reviews Genetics (2024) Vol. 25, Iss. 6, pp. 381-400
Closed Access | Times Cited: 51
LIANA+ provides an all-in-one framework for cell–cell communication inference
Daniel Dimitrov, Philipp Schäfer, Elias Farr, et al.
Nature Cell Biology (2024) Vol. 26, Iss. 9, pp. 1613-1622
Open Access | Times Cited: 23
Integrating single-cell multi-omics and prior biological knowledge for a functional characterization of the immune system
Philipp Schäfer, Daniel Dimitrov, Eduardo J. Villablanca, et al.
Nature Immunology (2024) Vol. 25, Iss. 3, pp. 405-417
Closed Access | Times Cited: 18
Challenges and best practices in omics benchmarking
Thomas G. Brooks, Nicholas F. Lahens, Antonijo Mrčela, et al.
Nature Reviews Genetics (2024) Vol. 25, Iss. 5, pp. 326-339
Closed Access | Times Cited: 16
Multimodal transcriptomics reveal neurogenic aging trajectories and age-related regional inflammation in the dentate gyrus
Yi‐Cheng Wu, Vladyslav I. Korobeynyk, Margherita Zamboni, et al.
Nature Neuroscience (2025) Vol. 28, Iss. 2, pp. 415-430
Open Access | Times Cited: 2
LIANA+: an all-in-one cell-cell communication framework
Daniel Dimitrov, Philipp Schäfer, Elias Farr, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access | Times Cited: 24
CellDialog: A Computational Framework for Ligand-Receptor-Mediated Cell-Cell Communication Analysis
Lihong Peng, Wei Xiong, Chendi Han, et al.
IEEE Journal of Biomedical and Health Informatics (2023) Vol. 28, Iss. 1, pp. 580-591
Closed Access | Times Cited: 24
Deep learning in spatially resolved transcriptomics: a comprehensive technical view
Roxana Zahedi, Mohammad Reza Eftekhariyan Ghamsari, Ahmadreza Argha, et al.
Briefings in Bioinformatics (2024) Vol. 25, Iss. 2
Open Access | Times Cited: 15
Deciphering cell–cell communication at single-cell resolution for spatial transcriptomics with subgraph-based graph attention network
Wenyi Yang, Pingping Wang, Shouping Xu, et al.
Nature Communications (2024) Vol. 15, Iss. 1
Open Access | Times Cited: 10
TP53 to mediate immune escape in tumor microenvironment: an overview of the research progress
Kaili Zhu, Fei Su, Jingru Yang, et al.
Molecular Biology Reports (2024) Vol. 51, Iss. 1
Open Access | Times Cited: 9
Navigating the landscapes of spatial transcriptomics: How computational methods guide the way
Runze Li, Xu Chen, Xuerui Yang
Wiley Interdisciplinary Reviews - RNA (2024) Vol. 15, Iss. 2
Closed Access | Times Cited: 8
Integrating Single-Cell and Spatial Transcriptomics to Uncover and Elucidate GP73-Mediated Pro-Angiogenic Regulatory Networks in Hepatocellular Carcinoma
Jiazhou Ye, Xing Gao, Xi huang, et al.
Research (2024) Vol. 7
Open Access | Times Cited: 8
Dissecting tumor microenvironment from spatially resolved transcriptomics data by heterogeneous graph learning
Chunman Zuo, Junjie Xia, Luonan Chen
Nature Communications (2024) Vol. 15, Iss. 1
Open Access | Times Cited: 8
Spatially resolved analysis of pancreatic cancer identifies therapy-associated remodeling of the tumor microenvironment
Carina Shiau, Jingyi Cao, Dennis Gong, et al.
Nature Genetics (2024)
Closed Access | Times Cited: 8
snRNA‐Seq and Spatial Transcriptome Reveal Cell–Cell Crosstalk Mediated Metabolic Regulation in Porcine Skeletal Muscle
Liu Guo, Mengmeng Han, Jianzhong Xu, et al.
Journal of Cachexia Sarcopenia and Muscle (2025) Vol. 16, Iss. 2
Open Access | Times Cited: 1
CellPhoneDB v5: inferring cell–cell communication from single-cell multiomics data
Kevin Troulé, Robert Petryszak, Batuhan Çakır, et al.
Nature Protocols (2025)
Open Access | Times Cited: 1
Latent feature extraction with a prior-based self-attention framework for spatial transcriptomics
Zhen Li, Xiaoyang Chen, Xuegong Zhang, et al.
Genome Research (2023) Vol. 33, Iss. 10, pp. 1757-1773
Open Access | Times Cited: 21
Sctensor detects many-to-many cell–cell interactions from single cell RNA-sequencing data
Koki Tsuyuzaki, Manabu Ishii, Itoshi Nikaido
BMC Bioinformatics (2023) Vol. 24, Iss. 1
Open Access | Times Cited: 19
ESICCC as a systematic computational framework for evaluation, selection, and integration of cell-cell communication inference methods
Jiaxin Luo, Minghua Deng, Xuegong Zhang, et al.
Genome Research (2023) Vol. 33, Iss. 10, pp. 1788-1805
Open Access | Times Cited: 16
Influence of intersignaling crosstalk on the intracellular localization of YAP/TAZ in lung cells
I. A. Govorova, Sofya Nikitochkina, Е. A. Vorotelyak
Cell Communication and Signaling (2024) Vol. 22, Iss. 1
Open Access | Times Cited: 7
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