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OpenAlex Citation Counts

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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

Statistics or biology: the zero-inflation controversy about scRNA-seq data
Ruochen Jiang, Tianyi Sun, Dongyuan Song, et al.
Genome biology (2022) Vol. 23, Iss. 1
Open Access | Times Cited: 424

Showing 1-25 of 424 citing articles:

Unsupervised removal of systematic background noise from droplet-based single-cell experiments using CellBender
Stephen J. Fleming, Mark Chaffin, Alessandro Arduini, et al.
Nature Methods (2023) Vol. 20, Iss. 9, pp. 1323-1335
Open Access | Times Cited: 268
hdWGCNA identifies co-expression networks in high-dimensional transcriptomics data
Samuel Morabito, Fairlie Reese, Negin Rahimzadeh, et al.
Cell Reports Methods (2023) Vol. 3, Iss. 6, pp. 100498-100498
Open Access | Times Cited: 219
Unsupervised removal of systematic background noise from droplet-based single-cell experiments using CellBender
Stephen J. Fleming, Mark Chaffin, Alessandro Arduini, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2019)
Open Access | Times Cited: 186
Applications of single-cell RNA sequencing in drug discovery and development
Bram Van de Sande, Joon Sang Lee, Euphemia Mutasa-Gottgens, et al.
Nature Reviews Drug Discovery (2023) Vol. 22, Iss. 6, pp. 496-520
Open Access | Times Cited: 162
RNA velocity unraveled
Gennady Gorin, Meichen Fang, Tara Chari, et al.
PLoS Computational Biology (2022) Vol. 18, Iss. 9, pp. e1010492-e1010492
Open Access | Times Cited: 111
Recent developments in application of single-cell RNA sequencing in the tumour immune microenvironment and cancer therapy
Peiheng Li, Xiangyu Kong, Yazhou He, et al.
Military Medical Research (2022) Vol. 9, Iss. 1
Open Access | Times Cited: 82
Predicting RNA-seq coverage from DNA sequence as a unifying model of gene regulation
Johannes Linder, Divyanshi Srivastava, Han Yuan, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access | Times Cited: 48
A Review of Single-Cell RNA-Seq Annotation, Integration, and Cell–Cell Communication
Changde Cheng, Wenan Chen, Hongjian Jin, et al.
Cells (2023) Vol. 12, Iss. 15, pp. 1970-1970
Open Access | Times Cited: 45
Challenges and best practices in omics benchmarking
Thomas G. Brooks, Nicholas F. Lahens, Antonijo Mrčela, et al.
Nature Reviews Genetics (2024) Vol. 25, Iss. 5, pp. 326-339
Closed Access | Times Cited: 11
High dimensional co-expression networks enable discovery of transcriptomic drivers in complex biological systems
Samuel Morabito, Fairlie Reese, Negin Rahimzadeh, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2022)
Open Access | Times Cited: 38
Helixer–de novoPrediction of Primary Eukaryotic Gene Models Combining Deep Learning and a Hidden Markov Model
Felix Holst, Anthony Bolger, Christopher Günther, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Closed Access | Times Cited: 30
Sex-biased gene expression at single-cell resolution: cause and consequence of sexual dimorphism
Iulia Darolti, Judith E. Mank
Evolution Letters (2023) Vol. 7, Iss. 3, pp. 148-156
Open Access | Times Cited: 28
Gene regulatory network reconstruction: harnessing the power of single-cell multi-omic data
Daniel Kim, Andy Tran, Hani Jieun Kim, et al.
npj Systems Biology and Applications (2023) Vol. 9, Iss. 1
Open Access | Times Cited: 28
Consequences and opportunities arising due to sparser single-cell RNA-seq datasets
Gerard A. Bouland, Ahmed Mahfouz, Marcel J. T. Reinders
Genome biology (2023) Vol. 24, Iss. 1
Open Access | Times Cited: 23
Single-cell omics: experimental workflow, data analyses and applications
Fengying Sun, Haoyan Li, Dongqing Sun, et al.
Science China Life Sciences (2024)
Closed Access | Times Cited: 8
Severus: accurate detection and characterization of somatic structural variation in tumor genomes using long reads
Ayse Keskus, Asher Bryant, Tanveer Ahmad, et al.
medRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 7
Tutorial on survival modeling with applications to omics data
Zhi Zhao, John Zobolas, Manuela Zucknick, et al.
Bioinformatics (2024) Vol. 40, Iss. 3
Open Access | Times Cited: 6
OASIS: An interpretable, finite-sample valid alternative to Pearson’s X 2 for scientific discovery
Tavor Z. Baharav, David Tse, Julia Salzman
Proceedings of the National Academy of Sciences (2024) Vol. 121, Iss. 15
Open Access | Times Cited: 6
K-nearest-neighbors induced topological PCA for single cell RNA-sequence data analysis
Sean Cottrell, Yuta Hozumi, Guo‐Wei Wei
Computers in Biology and Medicine (2024) Vol. 175, pp. 108497-108497
Open Access | Times Cited: 6
Bioinformatics perspectives on transcriptomics: A comprehensive review of bulk and single‐cell RNA sequencing analyses
Jorge A. Tzec‐Interián, Daianna González‐Padilla, Elsa Góngora‐Castillo
Quantitative Biology (2025) Vol. 13, Iss. 2
Open Access
Canopy2: Tumor Phylogeny Inference by Bulk DNA and Single-Cell RNA Sequencing
Ann Marie Weideman, Rujin Wang, Joseph G. Ibrahim, et al.
Statistics in Biosciences (2025)
Open Access
Investigating Subpopulation Dynamics in Clonal CHO-K1 Cells with Single-Cell RNA Sequencing
Luke B Morina, Haoyu Chris Cao, Chen Si-qi, et al.
Journal of Biotechnology (2025)
Closed Access
scHiGex: predicting single-cell gene expression based on single-cell Hi-C data
Bishal Shrestha, A. Siciliano, Hao Zhu, et al.
NAR Genomics and Bioinformatics (2025) Vol. 7, Iss. 1
Open Access
Single-cell copy number calling and event history reconstruction
Jack Kuipers, M. Anıl Tuncel, Pedro Ferreira, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2020)
Open Access | Times Cited: 53
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