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OpenAlex Citation Counts

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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

Cobolt: integrative analysis of multimodal single-cell sequencing data
Boying Gong, Yun Zhou, Elizabeth Purdom
Genome biology (2021) Vol. 22, Iss. 1
Open Access | Times Cited: 104

Showing 1-25 of 104 citing articles:

Dictionary learning for integrative, multimodal and scalable single-cell analysis
Yuhan Hao, Tim Stuart, Madeline H. Kowalski, et al.
Nature Biotechnology (2023) Vol. 42, Iss. 2, pp. 293-304
Open Access | Times Cited: 1322
The technological landscape and applications of single-cell multi-omics
Alev Baysoy, Zhiliang Bai, Rahul Satija, et al.
Nature Reviews Molecular Cell Biology (2023) Vol. 24, Iss. 10, pp. 695-713
Open Access | Times Cited: 446
MultiVI: deep generative model for the integration of multimodal data
Tal Ashuach, Mariano I. Gabitto, Rohan V. Koodli, et al.
Nature Methods (2023) Vol. 20, Iss. 8, pp. 1222-1231
Open Access | Times Cited: 122
Dictionary learning for integrative, multimodal, and scalable single-cell analysis
Yuhan Hao, Tim Stuart, Madeline H. Kowalski, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2022)
Open Access | Times Cited: 110
A Review of Single-Cell RNA-Seq Annotation, Integration, and Cell–Cell Communication
Changde Cheng, Wenan Chen, Hongjian Jin, et al.
Cells (2023) Vol. 12, Iss. 15, pp. 1970-1970
Open Access | Times Cited: 61
Deep generative modeling of transcriptional dynamics for RNA velocity analysis in single cells
Adam Gayoso, Philipp Weiler, Mohammad Lotfollahi, et al.
Nature Methods (2023) Vol. 21, Iss. 1, pp. 50-59
Open Access | Times Cited: 50
Stabilized mosaic single-cell data integration using unshared features
Shila Ghazanfar, Carolina Guibentif, John C. Marioni
Nature Biotechnology (2023) Vol. 42, Iss. 2, pp. 284-292
Open Access | Times Cited: 49
A fast, scalable and versatile tool for analysis of single-cell omics data
Kai Zhang, Nathan R. Zemke, Ethan J. Armand, et al.
Nature Methods (2024) Vol. 21, Iss. 2, pp. 217-227
Open Access | Times Cited: 45
The future of rapid and automated single-cell data analysis using reference mapping
Mohammad Lotfollahi, Yuhan Hao, Fabian J. Theis, et al.
Cell (2024) Vol. 187, Iss. 10, pp. 2343-2358
Open Access | Times Cited: 25
Mosaic integration and knowledge transfer of single-cell multimodal data with MIDAS
眞智子 平賀, Shuofeng Hu, Yaowen Chen, et al.
Nature Biotechnology (2024) Vol. 42, Iss. 10, pp. 1594-1605
Open Access | Times Cited: 24
Effective multi-modal clustering method via skip aggregation network for parallel scRNA-seq and scATAC-seq data
Dayu Hu, Ke Liang, Zhibin Dong, et al.
Briefings in Bioinformatics (2024) Vol. 25, Iss. 2
Open Access | Times Cited: 21
AI-driven multi-omics integration for multi-scale predictive modeling of genotype-environment-phenotype relationships
You Wu, Lei Xie
Computational and Structural Biotechnology Journal (2025) Vol. 27, pp. 265-277
Open Access | Times Cited: 4
Integrated analysis of multimodal single-cell data with structural similarity
Yingxin Cao, Laiyi Fu, Jie Wu, et al.
Nucleic Acids Research (2022) Vol. 50, Iss. 21, pp. e121-e121
Open Access | Times Cited: 61
A deep generative model for multi-view profiling of single-cell RNA-seq and ATAC-seq data
Gaoyang Li, Shaliu Fu, Shuguang Wang, et al.
Genome biology (2022) Vol. 23, Iss. 1
Open Access | Times Cited: 60
Clustering of single-cell multi-omics data with a multimodal deep learning method
Xiang Lin, Tian Tian, Zhi Wei, et al.
Nature Communications (2022) Vol. 13, Iss. 1
Open Access | Times Cited: 59
MIRA: joint regulatory modeling of multimodal expression and chromatin accessibility in single cells
Allen W. Lynch, Christina V. Theodoris, Henry W. Long, et al.
Nature Methods (2022) Vol. 19, Iss. 9, pp. 1097-1108
Open Access | Times Cited: 49
A unified computational framework for single-cell data integration with optimal transport
Kai Cao, Qiyu Gong, Yiguang Hong, et al.
Nature Communications (2022) Vol. 13, Iss. 1
Open Access | Times Cited: 47
Application of Deep Learning on Single-Cell RNA Sequencing Data Analysis: A Review
Matthew Brendel, Chang Su, Zilong Bai, et al.
Genomics Proteomics & Bioinformatics (2022) Vol. 20, Iss. 5, pp. 814-835
Open Access | Times Cited: 44
Multimodal deep learning approaches for single-cell multi-omics data integration
Tasbiraha Athaya, Rony Chowdhury Ripan, Xiaoman Li, et al.
Briefings in Bioinformatics (2023) Vol. 24, Iss. 5
Open Access | Times Cited: 33
A Roadmap for the Human Gut Cell Atlas
Matthias Zilbauer, Kylie R. James, Mandeep Kaur, et al.
Nature Reviews Gastroenterology & Hepatology (2023) Vol. 20, Iss. 9, pp. 597-614
Open Access | Times Cited: 28
siVAE: interpretable deep generative models for single-cell transcriptomes
Yongin Choi, Ruoxin Li, Gerald Quon
Genome biology (2023) Vol. 24, Iss. 1
Open Access | Times Cited: 25
Benchmarking algorithms for joint integration of unpaired and paired single-cell RNA-seq and ATAC-seq data
Michelle Y. Y. Lee, Klaus H. Kaestner, Mingyao Li
Genome biology (2023) Vol. 24, Iss. 1
Open Access | Times Cited: 25
Deep learning-based approaches for multi-omics data integration and analysis
Jenna L. Ballard, Zexuan Wang, Wenrui Li, et al.
BioData Mining (2024) Vol. 17, Iss. 1
Open Access | Times Cited: 12
Benchmarking multi-omics integration algorithms across single-cell RNA and ATAC data
Chuxi Xiao, Yixin Chen, Qiuchen Meng, et al.
Briefings in Bioinformatics (2024) Vol. 25, Iss. 2
Open Access | Times Cited: 10
Single-cell omics: experimental workflow, data analyses and applications
Fengying Sun, Haoyan Li, Dongqing Sun, et al.
Science China Life Sciences (2024)
Closed Access | Times Cited: 10
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