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OpenAlex Citation Counts

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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

Over 1000 tools reveal trends in the single-cell RNA-seq analysis landscape
Luke Zappia, Fabian J. Theis
Genome biology (2021) Vol. 22, Iss. 1
Open Access | Times Cited: 117

Showing 1-25 of 117 citing articles:

Best practices for single-cell analysis across modalities
Lukas Heumos, Anna C. Schaar, Christopher Lance, et al.
Nature Reviews Genetics (2023) Vol. 24, Iss. 8, pp. 550-572
Open Access | Times Cited: 506
The scverse project provides a computational ecosystem for single-cell omics data analysis
Isaac Virshup, Danila Bredikhin, Lukas Heumos, et al.
Nature Biotechnology (2023) Vol. 41, Iss. 5, pp. 604-606
Closed Access | Times Cited: 146
Single-cell technologies: From research to application
Lu Wen, Guoqiang Li, Tao Huang, et al.
The Innovation (2022) Vol. 3, Iss. 6, pp. 100342-100342
Open Access | Times Cited: 84
A comparison of marker gene selection methods for single-cell RNA sequencing data
Jeffrey M. Pullin, Davis J. McCarthy
Genome biology (2024) Vol. 25, Iss. 1
Open Access | Times Cited: 37
anndata: Access and store annotated data matrices
Isaac Virshup, Sergei Rybakov, Fabian J. Theis, et al.
The Journal of Open Source Software (2024) Vol. 9, Iss. 101, pp. 4371-4371
Open Access | Times Cited: 30
Challenges and best practices in omics benchmarking
Thomas G. Brooks, Nicholas F. Lahens, Antonijo Mrčela, et al.
Nature Reviews Genetics (2024) Vol. 25, Iss. 5, pp. 326-339
Closed Access | Times Cited: 17
Natural and targeted circuit reorganization after spinal cord injury
Mark A. Anderson, Jordan W. Squair, Matthieu Gautier, et al.
Nature Neuroscience (2022) Vol. 25, Iss. 12, pp. 1584-1596
Closed Access | Times Cited: 68
A guide to systems-level immunomics
Lorenzo Bonaguro, Jonas Schulte-Schrepping, Thomas Ulas, et al.
Nature Immunology (2022) Vol. 23, Iss. 10, pp. 1412-1423
Open Access | Times Cited: 53
High-performance single-cell gene regulatory network inference at scale: the Inferelator 3.0
Claudia Skok Gibbs, Christopher A. Jackson, Giuseppe-Antonio Saldi, et al.
Bioinformatics (2022) Vol. 38, Iss. 9, pp. 2519-2528
Open Access | Times Cited: 49
Single cell RNA‐sequencing: A powerful yet still challenging technology to study cellular heterogeneity
May Sin Ke, Badran Elshenawy, Helen Sheldon, et al.
BioEssays (2022) Vol. 44, Iss. 11
Open Access | Times Cited: 49
Machine Learning for Plant Stress Modeling: A Perspective towards Hormesis Management
Amanda Kim Rico-Chávez, Jesus Alejandro Franco, Arturo A. Fernandez‐Jaramillo, et al.
Plants (2022) Vol. 11, Iss. 7, pp. 970-970
Open Access | Times Cited: 44
Recent advances in T-cell receptor repertoire analysis: Bridging the gap with multimodal single-cell RNA sequencing
Sebastiaan Valkiers, Nicky de Vrij, Sofie Gielis, et al.
ImmunoInformatics (2022) Vol. 5, pp. 100009-100009
Open Access | Times Cited: 38
An Integrated Multi-Omics and Artificial Intelligence Framework for Advance Plant Phenotyping in Horticulture
Danuta Cembrowska-Lech, Adrianna Krzemińska, Tymoteusz Miller, et al.
Biology (2023) Vol. 12, Iss. 10, pp. 1298-1298
Open Access | Times Cited: 33
Pan-cancer classification of single cells in the tumour microenvironment
Ido Nofech-Mozes, David Soave, Philip Awadalla, et al.
Nature Communications (2023) Vol. 14, Iss. 1
Open Access | Times Cited: 31
Cellcano: supervised cell type identification for single cell ATAC-seq data
Wenjing Ma, Jiaying Lu, Hao Wu
Nature Communications (2023) Vol. 14, Iss. 1
Open Access | Times Cited: 25
Understanding glioblastoma at the single-cell level: Recent advances and future challenges
Yahaya A Yabo, Dieter Henrik Heiland
PLoS Biology (2024) Vol. 22, Iss. 5, pp. e3002640-e3002640
Open Access | Times Cited: 9
Single-Cell Sequencing: Genomic and Transcriptomic Approaches in Cancer Cell Biology
Ana Ortega-Batista, Yanelys Jaén-Alvarado, Dilan Moreno-Labrador, et al.
International Journal of Molecular Sciences (2025) Vol. 26, Iss. 5, pp. 2074-2074
Open Access | Times Cited: 1
scTenifoldKnk: An efficient virtual knockout tool for gene function predictions via single-cell gene regulatory network perturbation
Daniel Osorio, Yan Zhong, Guanxun Li, et al.
Patterns (2022) Vol. 3, Iss. 3, pp. 100434-100434
Open Access | Times Cited: 35
The shaky foundations of simulating single-cell RNA sequencing data
Helena L. Crowell, Sarah X. Morillo Leonardo, Charlotte Soneson, et al.
Genome biology (2023) Vol. 24, Iss. 1
Open Access | Times Cited: 22
Revisiting the Thorny Issue of Missing Values in Single-Cell Proteomics
Christophe Vanderaa, Laurent Gatto
Journal of Proteome Research (2023) Vol. 22, Iss. 9, pp. 2775-2784
Open Access | Times Cited: 20
ezSingleCell: an integrated one-stop single-cell and spatial omics analysis platform for bench scientists
Raman Sethi, Kok Siong Ang, Mengwei Li, et al.
Nature Communications (2024) Vol. 15, Iss. 1
Open Access | Times Cited: 7
A systematic overview of single-cell transcriptomics databases, their use cases, and limitations
Mahnoor N. Gondal -, Syed Hamad Hassan Shah, Arul M. Chinnaiyan, et al.
Frontiers in Bioinformatics (2024) Vol. 4
Open Access | Times Cited: 6
Quantitative approaches for decoding the specificity of the human T cell repertoire
Zahra S. Ghoreyshi, Jason T. George
Frontiers in Immunology (2023) Vol. 14
Open Access | Times Cited: 15
scEpiTools: a database to comprehensively interrogate analytic tools for single-cell epigenomic data
Zijing Gao, Xiaoyang Chen, Zhen Li, et al.
Journal of genetics and genomics/Journal of Genetics and Genomics (2023) Vol. 51, Iss. 4, pp. 462-465
Open Access | Times Cited: 15
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