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OpenAlex Citation Counts

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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

Sfaira accelerates data and model reuse in single cell genomics
David S. Fischer, Leander Dony, Martin König, et al.
Genome biology (2021) Vol. 22, Iss. 1
Open Access | Times Cited: 28

Showing 1-25 of 28 citing articles:

Multi-omics single-cell data integration and regulatory inference with graph-linked embedding
Zhi‐Jie Cao, Ge Gao
Nature Biotechnology (2022) Vol. 40, Iss. 10, pp. 1458-1466
Open Access | Times Cited: 296
The scverse project provides a computational ecosystem for single-cell omics data analysis
Isaac Virshup, Danila Bredikhin, Lukas Heumos, et al.
Nature Biotechnology (2023) Vol. 41, Iss. 5, pp. 604-606
Closed Access | Times Cited: 141
Single-cell transcriptomic atlas-guided development of CAR-T cells for the treatment of acute myeloid leukemia
Adrian Gottschlich, Moritz Thomas, Ruth Grünmeier, et al.
Nature Biotechnology (2023) Vol. 41, Iss. 11, pp. 1618-1632
Open Access | Times Cited: 56
Biologically informed deep learning to query gene programs in single-cell atlases
Mohammad Lotfollahi, Sergei Rybakov, Karin Hrovatin, et al.
Nature Cell Biology (2023)
Open Access | Times Cited: 55
scPerturb: harmonized single-cell perturbation data
Stefan Peidli, Tessa D. Green, Ciyue Shen, et al.
Nature Methods (2024) Vol. 21, Iss. 3, pp. 531-540
Open Access | Times Cited: 48
An integrated transcriptomic cell atlas of human neural organoids
Zhisong He, Leander Dony, Jonas Simon Fleck, et al.
Nature (2024) Vol. 635, Iss. 8039, pp. 690-698
Open Access | Times Cited: 18
Machine learning for perturbational single-cell omics
Yuge Ji, Mohammad Lotfollahi, Florian Wolf, et al.
Cell Systems (2021) Vol. 12, Iss. 6, pp. 522-537
Open Access | Times Cited: 84
Application of Deep Learning on Single-Cell RNA Sequencing Data Analysis: A Review
Matthew Brendel, Chang Su, Zilong Bai, et al.
Genomics Proteomics & Bioinformatics (2022) Vol. 20, Iss. 5, pp. 814-835
Open Access | Times Cited: 43
Delineating mouse β-cell identity during lifetime and in diabetes with a single cell atlas
Karin Hrovatin, Aimée Bastidas-Ponce, Mostafa Bakhti, et al.
Nature Metabolism (2023) Vol. 5, Iss. 9, pp. 1615-1637
Open Access | Times Cited: 34
scTab: Scaling cross-tissue single-cell annotation models
Felix Fischer, David S. Fischer, R. S. Mukhin, et al.
Nature Communications (2024) Vol. 15, Iss. 1
Open Access | Times Cited: 13
Single-Cell Analysis of the Pan-Cancer Immune Microenvironment and scTIME Portal
Fang Hong, Qianqian Meng, Weiyu Zhang, et al.
Cancer Immunology Research (2021) Vol. 9, Iss. 8, pp. 939-951
Open Access | Times Cited: 48
Toward modeling metabolic state from single-cell transcriptomics
Karin Hrovatin, David S. Fischer, Fabian J. Theis
Molecular Metabolism (2021) Vol. 57, pp. 101396-101396
Open Access | Times Cited: 40
A transcriptional cross species map of pancreatic islet cells
Sophie Tritschler, Moritz Thomas, Anika Böttcher, et al.
Molecular Metabolism (2022) Vol. 66, pp. 101595-101595
Open Access | Times Cited: 36
Nicheformer: A Foundation Model for Single-Cell and Spatial Omics
Anna C. Schaar, Alejandro Tejada-Lapuerta, Giovanni Palla, et al.
(2024)
Open Access | Times Cited: 7
An integrated transcriptomic cell atlas of human neural organoids
Zhisong He, Leander Dony, Jonas Simon Fleck, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access | Times Cited: 13
scPerturb: Harmonized Single-Cell Perturbation Data
Stefan Peidli, Tessa D. Green, Ciyue Shen, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2022)
Open Access | Times Cited: 15
SimBu: bias-aware simulation of bulk RNA-seq data with variable cell-type composition
Alexander Dietrich, Gregor Sturm, Lorenzo Merotto, et al.
Bioinformatics (2022) Vol. 38, Iss. Supplement_2, pp. ii141-ii147
Open Access | Times Cited: 15
Increasing resolution in stress neurobiology: from single cells to complex group behaviors
Lucas Miranda, Joeri Bordes, Serena Gasperoni, et al.
Stress (2023) Vol. 26, Iss. 1
Open Access | Times Cited: 7
Scaling cross-tissue single-cell annotation models
Felix Fischer, David S. Fischer, Evan Biederstedt, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access | Times Cited: 6
Biologically informed deep learning to infer gene program activity in single cells
Mohammad Lotfollahi, Sergei Rybakov, Karin Hrovatin, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2022)
Open Access | Times Cited: 10
An integrated single-cell atlas of the limb skeleton from development through adulthood
Tim Herpelinck, Liesbeth Ory, Tom Verbraeken, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2022)
Open Access | Times Cited: 10
Respiratory epithelial cell types, states and fates in the era of single-cell RNA-sequencing
Oleksandr Dudchenko, José Ordovás-Montañés, Colin D. Bingle
Biochemical Journal (2023) Vol. 480, Iss. 13, pp. 921-939
Open Access | Times Cited: 5
Integrating single-cell genomics pipelines to discover mechanisms of stem cell differentiation
Sophie Shen, Yuliangzi Sun, Maika Matsumoto, et al.
Trends in Molecular Medicine (2021) Vol. 27, Iss. 12, pp. 1135-1158
Closed Access | Times Cited: 8
Learning sequence-based regulatory dynamics in single-cell genomics
Ignacio L. Ibarra, Johanna Schneeberger, Ege Erdogan, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access
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