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OpenAlex Citation Counts

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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

Microbiome meta-analysis and cross-disease comparison enabled by the SIAMCAT machine learning toolbox
Jakob Wirbel, Konrad Zych, Morgan Essex, et al.
Genome biology (2021) Vol. 22, Iss. 1
Open Access | Times Cited: 184

Showing 1-25 of 184 citing articles:

Cross-cohort gut microbiome associations with immune checkpoint inhibitor response in advanced melanoma
Karla A. Lee, Andrew Maltez Thomas, Laura A. Bolte, et al.
Nature Medicine (2022) Vol. 28, Iss. 3, pp. 535-544
Open Access | Times Cited: 278
MGnify: the microbiome sequence data analysis resource in 2023
Lorna Richardson, Ben Allen, Germana Baldi, et al.
Nucleic Acids Research (2022) Vol. 51, Iss. D1, pp. D753-D759
Open Access | Times Cited: 205
A faecal microbiota signature with high specificity for pancreatic cancer
Ece Kartal, Thomas Schmidt, Esther Molina‐Montes, et al.
Gut (2022) Vol. 71, Iss. 7, pp. 1359-1372
Open Access | Times Cited: 184
Machine learning applications in microbial ecology, human microbiome studies, and environmental monitoring
Ryan B. Ghannam, Stephen M. Techtmann
Computational and Structural Biotechnology Journal (2021) Vol. 19, pp. 1092-1107
Open Access | Times Cited: 176
Machine learning and deep learning applications in microbiome research
Ricardo Hernández Medina, Svetlana Kutuzova, K Nielsen, et al.
ISME Communications (2022) Vol. 2, Iss. 1
Open Access | Times Cited: 138
Metagenomic Identification of Microbial Signatures Predicting Pancreatic Cancer From a Multinational Study
Naoyoshi Nagata, Suguru Nishijima, Yasushi Kojima, et al.
Gastroenterology (2022) Vol. 163, Iss. 1, pp. 222-238
Open Access | Times Cited: 119
Current levels of microplastic pollution impact wild seabird gut microbiomes
Gloria Fackelmann, Christopher K. Pham, Yasmina Rodríguez, et al.
Nature Ecology & Evolution (2023) Vol. 7, Iss. 5, pp. 698-706
Open Access | Times Cited: 94
Population structure discovery in meta-analyzed microbial communities and inflammatory bowel disease using MMUPHin
Siyuan Ma, Dmitry Shungin, Himel Mallick, et al.
Genome biology (2022) Vol. 23, Iss. 1
Open Access | Times Cited: 92
Microbial lactate utilisation and the stability of the gut microbiome
Petra Louis, Sylvia H. Duncan, Paul O. Sheridan, et al.
Gut Microbiome (2022) Vol. 3
Open Access | Times Cited: 83
Machine learning for microbiologists
Francesco Asnicar, Andrew Maltez Thomas, Andrea Passerini, et al.
Nature Reviews Microbiology (2023) Vol. 22, Iss. 4, pp. 191-205
Open Access | Times Cited: 79
The intestinal clock drives the microbiome to maintain gastrointestinal homeostasis
Marjolein Heddes, Baraa Altaha, Yunhui Niu, et al.
Nature Communications (2022) Vol. 13, Iss. 1
Open Access | Times Cited: 75
The best practice for microbiome analysis using R
Tao Wen, Guoqing Niu, Tong Chen, et al.
Protein & Cell (2023) Vol. 14, Iss. 10, pp. 713-725
Open Access | Times Cited: 58
Machine learning in marine ecology: an overview of techniques and applications
Peter Rubbens, Stephanie Brodie, Tristan Cordier, et al.
ICES Journal of Marine Science (2023) Vol. 80, Iss. 7, pp. 1829-1853
Open Access | Times Cited: 52
Custom scoring based on ecological topology of gut microbiota associated with cancer immunotherapy outcome
Lisa Derosa, Valerio Iebba, Carolina Alves Costa Silva, et al.
Cell (2024) Vol. 187, Iss. 13, pp. 3373-3389.e16
Open Access | Times Cited: 43
Associations of gut microbiota alterations with clinical, metabolic, and immune-inflammatory characteristics of chronic schizophrenia
Błażej Misiak, Edyta Pawlak, Krzysztof P. Rembacz, et al.
Journal of Psychiatric Research (2024) Vol. 171, pp. 152-160
Closed Access | Times Cited: 25
Meta-analysis reveals obesity associated gut microbial alteration patterns and reproducible contributors of functional shift
Deep Chanda, Debojyoti De
Gut Microbes (2024) Vol. 16, Iss. 1
Open Access | Times Cited: 21
Expanding the human gut microbiome atlas of Africa
Dylan G. Maghini, Ovokeraye H. Oduaran, Luicer A. Ingasia, et al.
Nature (2025)
Open Access | Times Cited: 2
MicrobiomeStatPlots: Microbiome statistics plotting gallery for meta‐omics and bioinformatics
Defeng Bai, Chuang Ma, Jiani Xun, et al.
iMeta (2025)
Open Access | Times Cited: 2
Cultivation-independent genomes greatly expand taxonomic-profiling capabilities of mOTUs across various environments
Hans‐Joachim Ruscheweyh, Alessio Milanese, Lucas Paoli, et al.
Microbiome (2022) Vol. 10, Iss. 1
Open Access | Times Cited: 67
Metagenomic strain detection with SameStr: identification of a persisting core gut microbiota transferable by fecal transplantation
Daniel Podlesny, Cesar Arze, Elisabeth Dörner, et al.
Microbiome (2022) Vol. 10, Iss. 1
Open Access | Times Cited: 39
Candida expansion in the gut of lung cancer patients associates with an ecological signature that supports growth under dysbiotic conditions
Bastian Seelbinder, Zoltán Lohinai, Ruben Vazquez-Uribe, et al.
Nature Communications (2023) Vol. 14, Iss. 1
Open Access | Times Cited: 23
Compared to histamine-2 receptor antagonist, proton pump inhibitor induces stronger oral-to-gut microbial transmission and gut microbiome alterations: a randomised controlled trial
Jiaying Zhu, Chuqing Sun, Min Li, et al.
Gut (2023) Vol. 73, Iss. 7, pp. 1087-1097
Open Access | Times Cited: 22
Multi-omic integration of microbiome data for identifying disease-associated modules
Efrat Muller, Itamar Shiryan, Elhanan Borenstein
Nature Communications (2024) Vol. 15, Iss. 1
Open Access | Times Cited: 15
Integrative metagenomic analysis reveals distinct gut microbial signatures related to obesity
Xinliang Hu, Yu Chong, Yuting He, et al.
BMC Microbiology (2024) Vol. 24, Iss. 1
Open Access | Times Cited: 9
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