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OpenAlex Citation Counts

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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

scMC learns biological variation through the alignment of multiple single-cell genomics datasets
Lihua Zhang, Qing Nie
Genome biology (2021) Vol. 22, Iss. 1
Open Access | Times Cited: 643

Showing 1-25 of 643 citing articles:

anndata: Annotated data
Isaac Virshup, Sergei Rybakov, Fabian J. Theis, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2021)
Open Access | Times Cited: 226
Multi-omics integration in the age of million single-cell data
Zhen Miao, Benjamin D. Humphreys, Andrew P. McMahon, et al.
Nature Reviews Nephrology (2021) Vol. 17, Iss. 11, pp. 710-724
Open Access | Times Cited: 140
Stromal HIF2 Regulates Immune Suppression in the Pancreatic Cancer Microenvironment
Carolina J. García García, Yanqing Huang, Natividad R. Fuentes, et al.
Gastroenterology (2022) Vol. 162, Iss. 7, pp. 2018-2031
Open Access | Times Cited: 97
CheckM2: a rapid, scalable and accurate tool for assessing microbial genome quality using machine learning
Alex Chklovski, Donovan H. Parks, Ben J. Woodcroft, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2022)
Open Access | Times Cited: 92
An integrated cell atlas of the human lung in health and disease
Lisa Sikkema, Daniel Strobl, Luke Zappia, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2022)
Open Access | Times Cited: 80
Predicting RNA-seq coverage from DNA sequence as a unifying model of gene regulation
Johannes Linder, Divyanshi Srivastava, Han Yuan, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access | Times Cited: 48
Optimizing Xenium In Situ data utility by quality assessment and best practice analysis workflows
Sergio Marco Salas, Paulo Czarnewski, Louis B. Kuemmerle, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access | Times Cited: 43
Unsupervised Spatially Embedded Deep Representation of Spatial Transcriptomics
Huazhu Fu, Hang Xu, Kelvin Kian Long Chong, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2021)
Open Access | Times Cited: 76
conST: an interpretable multi-modal contrastive learning framework for spatial transcriptomics
Yongshuo Zong, Tingyang Yu, Xuesong Wang, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2022)
Open Access | Times Cited: 56
A unified computational framework for single-cell data integration with optimal transport
Kai Cao, Qiyu Gong, Yiguang Hong, et al.
Nature Communications (2022) Vol. 13, Iss. 1
Open Access | Times Cited: 43
Multi-trait and cross-population genome-wide association studies across autoimmune and allergic diseases identify shared and distinct genetic component
Yuya Shirai, Yoshimitsu Nakanishi, Akari Suzuki, et al.
Annals of the Rheumatic Diseases (2022) Vol. 81, Iss. 9, pp. 1301-1312
Open Access | Times Cited: 41
Spatial Transcriptomics of Intraductal Papillary Mucinous Neoplasms of the Pancreas Identifies NKX6-2 as a Driver of Gastric Differentiation and Indolent Biological Potential
Marta Sans, Yuki Makino, Jimin Min, et al.
Cancer Discovery (2023) Vol. 13, Iss. 8, pp. 1844-1861
Open Access | Times Cited: 23
Targeting tumor–stromal interactions in triple-negative breast cancer using a human vascularized micro-tumor model
Stephanie J. Hachey, Christopher J. Hatch, Daniela Gaebler, et al.
Breast Cancer Research (2024) Vol. 26, Iss. 1
Open Access | Times Cited: 9
Single-cell omics: experimental workflow, data analyses and applications
Fengying Sun, Haoyan Li, Dongqing Sun, et al.
Science China Life Sciences (2024)
Closed Access | Times Cited: 8
scDisInFact: disentangled learning for integration and prediction of multi-batch multi-condition single-cell RNA-sequencing data
Ziqi Zhang, Xinye Zhao, Mehak Bindra, et al.
Nature Communications (2024) Vol. 15, Iss. 1
Open Access | Times Cited: 7
Severus: accurate detection and characterization of somatic structural variation in tumor genomes using long reads
Ayse Keskus, Asher Bryant, Tanveer Ahmad, et al.
medRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 7
snPATHO-seq: unlocking the FFPE archives for single nucleus RNA profiling
Andrés F. Vallejo, Kate Harvey, Taopeng Wang, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2022)
Open Access | Times Cited: 34
Spateo: multidimensional spatiotemporal modeling of single-cell spatial transcriptomics
Xiaojie Qiu, Daniel Y. Zhu, Jiajun Yao, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2022)
Open Access | Times Cited: 30
Single-cell analysis of human basal cell carcinoma reveals novel regulators of tumor growth and the tumor microenvironment
Christian F. Guerrero‐Juarez, Gun Ho Lee, Yingzi Liu, et al.
Science Advances (2022) Vol. 8, Iss. 23
Open Access | Times Cited: 26
SEraster: a rasterization preprocessing framework for scalable spatial omics data analysis
Gohta Aihara, Kalen Clifton, Mayling Chen, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 5
Exploring a large cancer cell line RNA-sequencing dataset with k-mers
Chloé Bessière, Haoliang Xue, Benoît Guibert, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 4
Multimodal analyses of vitiligo skin identifies tissue characteristics of stable disease
Jessica Shiu, Lihua Zhang, Griffin Lentsch, et al.
JCI Insight (2022) Vol. 7, Iss. 13
Open Access | Times Cited: 25
scINSIGHT for interpreting single-cell gene expression from biologically heterogeneous data
Kun Qian, Shiwei Fu, Hongwei Li, et al.
Genome biology (2022) Vol. 23, Iss. 1
Open Access | Times Cited: 24
Viral coinfection promotes tuberculosis immunopathogenesis by type I IFN signaling-dependent impediment of Th1 cell pulmonary influx
Tae Gun Kang, Kee Woong Kwon, Kyung Soo Kim, et al.
Nature Communications (2022) Vol. 13, Iss. 1
Open Access | Times Cited: 23
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