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OpenAlex Citation Counts

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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

EmptyDrops: distinguishing cells from empty droplets in droplet-based single-cell RNA sequencing data
Aaron T. L. Lun, Samantha J. Riesenfeld, Tallulah Andrews, et al.
Genome biology (2019) Vol. 20, Iss. 1
Open Access | Times Cited: 833

Showing 1-25 of 833 citing articles:

Landscape and Dynamics of Single Immune Cells in Hepatocellular Carcinoma
Qiming Zhang, Yao He, Nan Luo, et al.
Cell (2019) Vol. 179, Iss. 4, pp. 829-845.e20
Open Access | Times Cited: 1159
Single-cell chromatin state analysis with Signac
Tim Stuart, Avi Srivastava, Shaista Madad, et al.
Nature Methods (2021) Vol. 18, Iss. 11, pp. 1333-1341
Open Access | Times Cited: 976
A single-cell and spatially resolved atlas of human breast cancers
Sunny Z. Wu, Ghamdan Al‐Eryani, Daniel Roden, et al.
Nature Genetics (2021) Vol. 53, Iss. 9, pp. 1334-1347
Open Access | Times Cited: 896
A single-cell molecular map of mouse gastrulation and early organogenesis
Blanca Pijuan-Sala, Jonathan A. Griffiths, Carolina Guibentif, et al.
Nature (2019) Vol. 566, Iss. 7745, pp. 490-495
Open Access | Times Cited: 849
Transcriptome-scale spatial gene expression in the human dorsolateral prefrontal cortex
Kristen R. Maynard, Leonardo Collado‐Torres, Lukas M. Weber, et al.
Nature Neuroscience (2021) Vol. 24, Iss. 3, pp. 425-436
Open Access | Times Cited: 710
Orchestrating single-cell analysis with Bioconductor
Robert A. Amezquita, Aaron T. L. Lun, Étienne Becht, et al.
Nature Methods (2019) Vol. 17, Iss. 2, pp. 137-145
Open Access | Times Cited: 697
Single-cell transcriptomes from human kidneys reveal the cellular identity of renal tumors
Matthew D. Young, Thomas J. Mitchell, Felipe A. Vieira Braga, et al.
Science (2018) Vol. 361, Iss. 6402, pp. 594-599
Open Access | Times Cited: 623
MULTI-seq: sample multiplexing for single-cell RNA sequencing using lipid-tagged indices
Christopher S. McGinnis, David M. Patterson, Juliane Winkler, et al.
Nature Methods (2019) Vol. 16, Iss. 7, pp. 619-626
Open Access | Times Cited: 552
A single-cell and single-nucleus RNA-Seq toolbox for fresh and frozen human tumors
Michal Slyper, Caroline Porter, Orr Ashenberg, et al.
Nature Medicine (2020) Vol. 26, Iss. 5, pp. 792-802
Open Access | Times Cited: 545
Comparative cellular analysis of motor cortex in human, marmoset and mouse
Trygve E. Bakken, Nikolas L. Jorstad, Qiwen Hu, et al.
Nature (2021) Vol. 598, Iss. 7879, pp. 111-119
Open Access | Times Cited: 543
Molecular topography of an entire nervous system
Seth R. Taylor, Gabriel Santpere, Alexis Weinreb, et al.
Cell (2021) Vol. 184, Iss. 16, pp. 4329-4347.e23
Open Access | Times Cited: 517
Dysregulation of brain and choroid plexus cell types in severe COVID-19
Andrew C. Yang, Fabian Kern, Patricia Morán Losada, et al.
Nature (2021) Vol. 595, Iss. 7868, pp. 565-571
Open Access | Times Cited: 511
Expression Atlas update: from tissues to single cells
Irene Papatheodorou, Pablo Moreno, Jonathan Manning, et al.
Nucleic Acids Research (2019)
Open Access | Times Cited: 484
Systematic assessment of tissue dissociation and storage biases in single-cell and single-nucleus RNA-seq workflows
Elena Denisenko, Belinda B. Guo, Matthew Jones, et al.
Genome biology (2020) Vol. 21, Iss. 1
Open Access | Times Cited: 461
A single-cell atlas of human and mouse white adipose tissue
Margo P. Emont, Christopher Jacobs, Adam L. Essene, et al.
Nature (2022) Vol. 603, Iss. 7903, pp. 926-933
Open Access | Times Cited: 458
Spatially organized multicellular immune hubs in human colorectal cancer
Karin Pelka, Matan Hofree, Jonathan H. Chen, et al.
Cell (2021) Vol. 184, Iss. 18, pp. 4734-4752.e20
Open Access | Times Cited: 441
Functional characterization of the dural sinuses as a neuroimmune interface
Justin Rustenhoven, Antoine Drieu, Tornike Mamuladze, et al.
Cell (2021) Vol. 184, Iss. 4, pp. 1000-1016.e27
Open Access | Times Cited: 434
Supervised classification enables rapid annotation of cell atlases
Hannah A. Pliner, Jay Shendure, Cole Trapnell
Nature Methods (2019) Vol. 16, Iss. 10, pp. 983-986
Open Access | Times Cited: 418
scRNA-seq assessment of the human lung, spleen, and esophagus tissue stability after cold preservation
Elo Madissoon, Anna Wilbrey-Clark, Ricardo J. Miragaia, et al.
Genome biology (2019) Vol. 21, Iss. 1
Open Access | Times Cited: 382
Spatiotemporal analysis of human intestinal development at single-cell resolution
David Fawkner-Corbett, Agne Antanaviciute, Kaushal Parikh, et al.
Cell (2021) Vol. 184, Iss. 3, pp. 810-826.e23
Open Access | Times Cited: 378
Spatiotemporal immune zonation of the human kidney
Benjamin Stewart, John R. Ferdinand, Matthew D. Young, et al.
Science (2019) Vol. 365, Iss. 6460, pp. 1461-1466
Open Access | Times Cited: 354
Joint probabilistic modeling of single-cell multi-omic data with totalVI
Adam Gayoso, Zoë Steier, Romain Lopez, et al.
Nature Methods (2021) Vol. 18, Iss. 3, pp. 272-282
Open Access | Times Cited: 351
Modular, efficient and constant-memory single-cell RNA-seq preprocessing
Páll Melsted, A. Sina Booeshaghi, Lauren P. Liu, et al.
Nature Biotechnology (2021) Vol. 39, Iss. 7, pp. 813-818
Open Access | Times Cited: 346
Stromal cell diversity associated with immune evasion in human triple‐negative breast cancer
Sunny Z. Wu, Daniel Roden, Chenfei Wang, et al.
The EMBO Journal (2020) Vol. 39, Iss. 19
Open Access | Times Cited: 332
Molecular characterization of selectively vulnerable neurons in Alzheimer’s disease
Kun Leng, Emmy Li, Rana Eser, et al.
Nature Neuroscience (2021) Vol. 24, Iss. 2, pp. 276-287
Open Access | Times Cited: 326
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