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OpenAlex Citation Counts

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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

BugSeq: a highly accurate cloud platform for long-read metagenomic analyses
Jeremy Fan, Steven Huang, Samuel D. Chorlton
BMC Bioinformatics (2021) Vol. 22, Iss. 1
Open Access | Times Cited: 58

Showing 1-25 of 58 citing articles:

Evaluation of taxonomic classification and profiling methods for long-read shotgun metagenomic sequencing datasets
Daniel M. Portik, C. Titus Brown, N. Tessa Pierce‐Ward
BMC Bioinformatics (2022) Vol. 23, Iss. 1
Open Access | Times Cited: 76
Unraveling metagenomics through long-read sequencing: a comprehensive review
Chan Kyung Kim, Monnat Pongpanich, Thantrira Porntaveetus
Journal of Translational Medicine (2024) Vol. 22, Iss. 1
Open Access | Times Cited: 32
Unveiling microbial diversity: harnessing long-read sequencing technology
Daniel Paiva Agustinho, Yilei Fu, Vipin K. Menon, et al.
Nature Methods (2024) Vol. 21, Iss. 6, pp. 954-966
Closed Access | Times Cited: 27
Agnostic Sequencing for Detection of Viral Pathogens
Nick P. G. Gauthier, Samuel D. Chorlton, Mel Krajden, et al.
Clinical Microbiology Reviews (2023) Vol. 36, Iss. 1
Open Access | Times Cited: 25
Optimized bacterial community characterization through full-length 16S rRNA gene sequencing utilizing MinION nanopore technology
Alessandro Bertolo, Ezra Valido, Jivko Stoyanov
BMC Microbiology (2024) Vol. 24, Iss. 1
Open Access | Times Cited: 15
Ten common issues with reference sequence databases and how to mitigate them
Samuel D. Chorlton
Frontiers in Bioinformatics (2024) Vol. 4
Open Access | Times Cited: 14
Comparative analysis of metagenomic classifiers for long-read sequencing datasets
Josip Marić, Krešimir Križanović, Sylvain Riondet, et al.
BMC Bioinformatics (2024) Vol. 25, Iss. 1
Open Access | Times Cited: 12
CZ ID: a cloud-based, no-code platform enabling advanced long read metagenomic analysis
Sara E. Simmonds, Lynn Ly, John Beaulaurier, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 9
Cloud Computing Enabled Big Multi-Omics Data Analytics
Saraswati Koppad, B. Annappa, Georgios V. Gkoutos, et al.
Bioinformatics and Biology Insights (2021) Vol. 15
Open Access | Times Cited: 52
Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes
Xi Chen, Xiaole Yin, Xianghui Shi, et al.
Genome biology (2024) Vol. 25, Iss. 1
Open Access | Times Cited: 5
Long-Reads-Based Metagenomics in Clinical Diagnosis With a Special Focus on Fungal Infections
Minh Thuy Vi Hoang, László Irinyi, Yiheng Hu, et al.
Frontiers in Microbiology (2022) Vol. 12
Open Access | Times Cited: 20
Nanopore duplex sequencing as an alternative to Illumina MiSeq sequencing for eDNA-based biomonitoring of coastal aquaculture impacts
Thorsten Stoeck, Sven Nicolai Katzenmeier, Hans‐Werner Breiner, et al.
Metabarcoding and Metagenomics (2024) Vol. 8
Open Access | Times Cited: 4
Does strain-level persistence of lactobacilli in long-term back-slopped sourdoughs inform on domestication of food-fermenting lactic acid bacteria?
Vi D. Pham, Zhaohui Xu, David J. Simpson, et al.
Applied and Environmental Microbiology (2024)
Open Access | Times Cited: 4
DEMINERS enables clinical metagenomics and comparative transcriptomic analysis by increasing throughput and accuracy of nanopore direct RNA sequencing
Junwei Song, L. Lin, Chao Tang, et al.
Genome biology (2025) Vol. 26, Iss. 1
Open Access
Academic and clinical perspectives of metagenome sequencing as a diagnostic tool for infectious disease: an interpretive phenomenological study
Hannah Trivett, Alistair C. Darby, Oyinlola Oyebode
BMC Infectious Diseases (2025) Vol. 25, Iss. 1
Open Access
Oxford nanopore next generation sequencing in a front-line clinical microbiology laboratory without on-site bioinformaticians
Max Bloomfield, Samantha Hutton, Charles Velasco, et al.
Pathology (2023) Vol. 56, Iss. 3, pp. 444-447
Closed Access | Times Cited: 10
Microbial composition and dynamics in environmental samples from a ready-to-eat food production facility with a long-term colonisation of Listeria monocytogenes
María Díaz, Heather Aird, Thanh Le-Viet, et al.
Food Microbiology (2024) Vol. 125, pp. 104649-104649
Open Access | Times Cited: 3
Nanopore metagenomic sequencing for detection and characterization of SARS-CoV-2 in clinical samples
Nick P. G. Gauthier, Cassidy Nelson, Michael B. Bonsall, et al.
PLoS ONE (2021) Vol. 16, Iss. 11, pp. e0259712-e0259712
Open Access | Times Cited: 21
BugSplit enables genome-resolved metagenomics through highly accurate taxonomic binning of metagenomic assemblies
Induja Chandrakumar, Nick P. G. Gauthier, Cassidy Nelson, et al.
Communications Biology (2022) Vol. 5, Iss. 1
Open Access | Times Cited: 14
Benchmarking microbial DNA enrichment protocols from human intestinal biopsies
Dmitrij Marchukov, Jiaqi Li, Pascal Juillerat, et al.
Frontiers in Genetics (2023) Vol. 14
Open Access | Times Cited: 8
Next-generation sequencing for cytomegalovirus antiviral resistance genotyping in a clinical virology laboratory
Samuel D. Chorlton, Gordon Ritchie, Tanya Lawson, et al.
Antiviral Research (2021) Vol. 192, pp. 105123-105123
Closed Access | Times Cited: 20
Next- and Third-Generation Sequencing Outperforms Culture-Based Methods in the Diagnosis of Ascitic Fluid Bacterial Infections of ICU Patients
Hanna Goelz, Simon Wetzel, Negin Mehrbarzin, et al.
Cells (2021) Vol. 10, Iss. 11, pp. 3226-3226
Open Access | Times Cited: 17
Surveillance of Listeria monocytogenes: Early Detection, Population Dynamics, and Quasimetagenomic Sequencing during Selective Enrichment
Eva Wagner, Annette Fagerlund, Solveig Langsrud, et al.
Applied and Environmental Microbiology (2021) Vol. 87, Iss. 24
Open Access | Times Cited: 17
Detection of antiviral drug resistance in patients with congenital cytomegalovirus infection using long-read sequencing: a retrospective observational study
Yuka Torii, Kazuhiro Horiba, Jun‐ichi Kawada, et al.
BMC Infectious Diseases (2022) Vol. 22, Iss. 1
Open Access | Times Cited: 12
Dysbiosis of the Beneficial Gut Bacteria in Patients with Parkinson’s Disease from India
Sujith Pavan, Sankar Prasad Gorthi, Arvind Prabhu, et al.
Annals of Indian Academy of Neurology (2023) Vol. 26, Iss. 6, pp. 908-916
Open Access | Times Cited: 6
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