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OpenAlex Citation Counts

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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

Overview of the ID, EPI and REL tasks of BioNLP Shared Task 2011
Sampo Pyysalo, Tomoko Ohta, Rafał Rak, et al.
BMC Bioinformatics (2012) Vol. 13, Iss. S11
Open Access | Times Cited: 89

Showing 1-25 of 89 citing articles:

brat: a Web-based Tool for NLP-Assisted Text Annotation
Pontus Stenetorp, Sampo Pyysalo, Goran Topić, et al.
Conference of the European Chapter of the Association for Computational Linguistics (2012), pp. 102-107
Closed Access | Times Cited: 925
A neural network multi-task learning approach to biomedical named entity recognition
Gamal Crichton, Sampo Pyysalo, Billy Chiu, et al.
BMC Bioinformatics (2017) Vol. 18, Iss. 1
Open Access | Times Cited: 236
Automated systems for the de-identification of longitudinal clinical narratives: Overview of 2014 i2b2/UTHealth shared task Track 1
Amber Stubbs, Christopher Kotfila, Özlem Uzuner
Journal of Biomedical Informatics (2015) Vol. 58, pp. S11-S19
Open Access | Times Cited: 229
Community challenges in biomedical text mining over 10 years: success, failure and the future
Chung‐Chi Huang, Zhiyong Lu
Briefings in Bioinformatics (2015) Vol. 17, Iss. 1, pp. 132-144
Open Access | Times Cited: 212
Event extraction across multiple levels of biological organization
Sampo Pyysalo, Tomoko Ohta, Makoto Miwa, et al.
Bioinformatics (2012) Vol. 28, Iss. 18, pp. i575-i581
Open Access | Times Cited: 141
Large-Scale Event Extraction from Literature with Multi-Level Gene Normalization
Sofie Van Landeghem, Jari Björne, Chih-Hsuan Wei, et al.
PLoS ONE (2013) Vol. 8, Iss. 4, pp. e55814-e55814
Open Access | Times Cited: 125
Prediction of synergistic anti-cancer drug combinations based on drug target network and drug induced gene expression profiles
Xiangyi Li, Yingjie Xu, Hui Cui, et al.
Artificial Intelligence in Medicine (2017) Vol. 83, pp. 35-43
Closed Access | Times Cited: 97
A survey on clinical natural language processing in the United Kingdom from 2007 to 2022
Honghan Wu, Minhong Wang, Jinge Wu, et al.
npj Digital Medicine (2022) Vol. 5, Iss. 1
Open Access | Times Cited: 44
Overview of the Cancer Genetics and Pathway Curation tasks of BioNLP Shared Task 2013
Sampo Pyysalo, Tomoko Ohta, Rafał Rak, et al.
BMC Bioinformatics (2015) Vol. 16, Iss. S10
Open Access | Times Cited: 85
Event-based text mining for biology and functional genomics
Sophia Ananiadou, Paul M. Thompson, Raheel Nawaz, et al.
Briefings in Functional Genomics (2014) Vol. 14, Iss. 3, pp. 213-230
Open Access | Times Cited: 72
Empirical Study of Zero-Shot NER with ChatGPT
Tingyu Xie, Qi Li, Jian Zhang, et al.
Proceedings of the 2021 Conference on Empirical Methods in Natural Language Processing (2023)
Open Access | Times Cited: 16
The overview of the BioRED (Biomedical Relation Extraction Dataset) track at BioCreative VIII
Rezarta Islamaj, Po-Ting Lai, Chih-Hsuan Wei, et al.
Database (2024) Vol. 2024
Open Access | Times Cited: 6
Anatomical entity mention recognition at literature scale
Sampo Pyysalo, Sophia Ananiadou
Bioinformatics (2013) Vol. 30, Iss. 6, pp. 868-875
Open Access | Times Cited: 69
RegulaTome: a corpus of typed, directed, and signed relations between biomedical entities in the scientific literature
Katerina Nastou, Farrokh Mehryary, Tomoko Ohta, et al.
Database (2024) Vol. 2024
Open Access | Times Cited: 5
Typology of Event Data Imperfections
Nassira Achich, Jihen Gargouri Krid, Fatma Ghorbel, et al.
Lecture notes in networks and systems (2025), pp. 101-111
Closed Access
RLIMS-P 2.0: A Generalizable Rule-Based Information Extraction System for Literature Mining of Protein Phosphorylation Information
Manabu Torii, Cecilia Arighi, Gang Li, et al.
IEEE/ACM Transactions on Computational Biology and Bioinformatics (2014) Vol. 12, Iss. 1, pp. 17-29
Open Access | Times Cited: 51
Overview of the Pathway Curation (PC) task of BioNLP Shared Task 2013
Tomoko Ohta, Sampo Pyysalo, Rafał Rak, et al.
Meeting of the Association for Computational Linguistics (2013), pp. 67-75
Closed Access | Times Cited: 50
Overview of the Cancer Genetics (CG) task of BioNLP Shared Task 2013
Sampo Pyysalo, Tomoko Ohta, Sophia Ananiadou
Meeting of the Association for Computational Linguistics (2013), pp. 58-66
Closed Access | Times Cited: 47
Wide coverage biomedical event extraction using multiple partially overlapping corpora
Makoto Miwa, Sampo Pyysalo, Tomoko Ohta, et al.
BMC Bioinformatics (2013) Vol. 14, Iss. 1
Open Access | Times Cited: 46
Enhancing Search: Events and Their Discourse Context
Sophia Ananiadou, Paul M. Thompson, Raheel Nawaz
Lecture notes in computer science (2013), pp. 318-334
Closed Access | Times Cited: 42
The Colorado Richly Annotated Full Text (CRAFT) Corpus: Multi-Model Annotation in the Biomedical Domain
K. Bretonnel Cohen, Karin Verspoor, Karën Fort, et al.
Springer eBooks (2017), pp. 1379-1394
Closed Access | Times Cited: 36
Relationship between Distinct African Cholera Epidemics Revealed via MLVA Haplotyping of 337 Vibrio cholerae Isolates
Sandra Moore, Berthe Miwanda, Adodo Yao Sadji, et al.
PLoS neglected tropical diseases (2015) Vol. 9, Iss. 6, pp. e0003817-e0003817
Open Access | Times Cited: 32
Bidirectional long short-term memory with CRF for detecting biomedical event trigger in FastText semantic space
Yan Wang, Jian Wang, Hongfei Lin, et al.
BMC Bioinformatics (2018) Vol. 19, Iss. S20
Open Access | Times Cited: 31
Cell line name recognition in support of the identification of synthetic lethality in cancer from text
Suwisa Kaewphan, Sofie Van Landeghem, Tomoko Ohta, et al.
Bioinformatics (2015) Vol. 32, Iss. 2, pp. 276-282
Open Access | Times Cited: 29
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