Open Access Helper

OpenAlex Citation Counts

OpenAlex Citations Logo

OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

Improved Bacterial Single-Cell RNA-Seq through Automated MATQ-Seq and Cas9-Based Removal of rRNA Reads
Christina Homberger, Regan J. Hayward, Lars Barquist, et al.
mBio (2023) Vol. 14, Iss. 2
Open Access | Times Cited: 44

Showing 1-25 of 44 citing articles:

Bacterial droplet-based single-cell RNA-seq reveals antibiotic-associated heterogeneous cellular states
Peijun Ma, Haley M. Amemiya, Lorrie L. He, et al.
Cell (2023) Vol. 186, Iss. 4, pp. 877-891.e14
Open Access | Times Cited: 148
Advances in single-cell RNA sequencing and its applications in cancer research
Dezhi Huang, Naya Ma, Xinlei Li, et al.
Journal of Hematology & Oncology (2023) Vol. 16, Iss. 1
Open Access | Times Cited: 78
Droplet-based high-throughput single microbe RNA sequencing by smRandom-seq
Ziye Xu, Yuting Wang, Kuanwei Sheng, et al.
Nature Communications (2023) Vol. 14, Iss. 1
Open Access | Times Cited: 49
Co-transcriptional gene regulation in eukaryotes and prokaryotes
Morgan Shine, Jackson M. Gordon, Leonard Schärfen, et al.
Nature Reviews Molecular Cell Biology (2024) Vol. 25, Iss. 7, pp. 534-554
Closed Access | Times Cited: 23
Transcription–replication interactions reveal bacterial genome regulation
Andrew W. Pountain, Peien Jiang, Tianyou Yao, et al.
Nature (2024) Vol. 626, Iss. 7999, pp. 661-669
Open Access | Times Cited: 20
Single-cell massively-parallel multiplexed microbial sequencing (M3-seq) identifies rare bacterial populations and profiles phage infection
Bruce Wang, Aaron E. Lin, Jiayi Yuan, et al.
Nature Microbiology (2023) Vol. 8, Iss. 10, pp. 1846-1862
Open Access | Times Cited: 38
The Blood Microbiome and Health: Current Evidence, Controversies, and Challenges
Hong Sheng Cheng, Sin Pei Tan, David Meng Kit Wong, et al.
International Journal of Molecular Sciences (2023) Vol. 24, Iss. 6, pp. 5633-5633
Open Access | Times Cited: 33
Sequencing-based analysis of microbiomes
Yishay Pinto, Ami S. Bhatt
Nature Reviews Genetics (2024) Vol. 25, Iss. 12, pp. 829-845
Closed Access | Times Cited: 14
High‐Throughput Host–Microbe Single‐Cell RNA Sequencing Reveals Ferroptosis‐Associated Heterogeneity during Acinetobacter baumannii Infection
Hongen Meng, Tianyu Zhang, Wang Zhang, et al.
Angewandte Chemie International Edition (2024) Vol. 63, Iss. 18
Closed Access | Times Cited: 6
Bacterial single-cell RNA sequencing captures biofilm transcriptional heterogeneity and differential responses to immune pressure
Lee E. Korshoj, Tammy Kielian
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 5
Exploring the transcriptional landscape of phage–host interactions using novel high-throughput approaches
Leena Putzeys, Laura Wicke, Ana Brandão, et al.
Current Opinion in Microbiology (2024) Vol. 77, pp. 102419-102419
Open Access | Times Cited: 4
Advances and applications in single-cell and spatial genomics
Jingjing Wang, Fang Ye, Haoxi Chai, et al.
Science China Life Sciences (2024)
Closed Access | Times Cited: 4
Self-driving laboratories, advanced immunotherapies and five more technologies to watch in 2025
Michael Eisenstein
Nature (2025) Vol. 637, Iss. 8047, pp. 1008-1011
Open Access
Cutting-edge tools for unveiling the dynamics of plasmid–host interactions
Qiu Yang, Jianmei Gao, Shaolin Zhou, et al.
Trends in Microbiology (2025)
Closed Access
Highly multiplexed spatial transcriptomics in bacteria
Ari Sarfatis, Yuanyou Wang, Nana Twumasi-Ankrah, et al.
Science (2025) Vol. 387, Iss. 6732
Closed Access
Resolving spatiotemporal dynamics in bacterial multicellular populations: approaches and challenges
Suyen Espinoza Miranda, Gorkhmaz Abbaszade, Wolfgang R. Hess, et al.
Microbiology and Molecular Biology Reviews (2025)
Closed Access
Recent advances in single-cell RNA sequencing of Bacteria: Techniques, challenges, and applications
Mika Nishimura, Kazuki Takahashi, Masahito Hosokawa
Journal of Bioscience and Bioengineering (2025)
Closed Access
Highly Multiplexed Spatial Transcriptomics in Bacteria
Ari Sarfatis, Yuanyou Wang, Nana Twumasi-Ankrah, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Closed Access | Times Cited: 4
What’s in a name? Characteristics of clinical biofilms
Mads Lichtenberg, Tom Coenye, Matthew R. Parsek, et al.
FEMS Microbiology Reviews (2023) Vol. 47, Iss. 5
Open Access | Times Cited: 10
An Advanced Bacterial Single-cell RNA-seq Reveals Biofilm Heterogeneity
Xiaodan Yan, Hebin Liao, Chenyi Wang, et al.
eLife (2024) Vol. 13
Open Access | Times Cited: 3
CRISPR-Cas9-based repeat depletion for high-throughput genotyping of complex plant genomes
Marzia Rossato, Luca Marcolungo, Luca De Antoni, et al.
Genome Research (2023) Vol. 33, Iss. 5, pp. 787-797
Open Access | Times Cited: 7
Bacterial single-cell RNA sequencing captures biofilm transcriptional heterogeneity and differential responses to immune pressure
Lee E. Korshoj, Tammy Kielian
Nature Communications (2024) Vol. 15, Iss. 1
Closed Access | Times Cited: 2
Single-cell analysis and spatial resolution of the gut microbiome
Bhoomi Madhu, Brittany Miller, Maayan Levy
Frontiers in Cellular and Infection Microbiology (2023) Vol. 13
Open Access | Times Cited: 5
Bacterial phenotypic heterogeneity through the lens of single-cell RNA sequencing
Alex W. Walls, Adam Rosenthal
Transcription (2024) Vol. 15, Iss. 1-2, pp. 48-62
Closed Access | Times Cited: 1
Development of a roadmap for action on the application of Omics and associated Bioinformatics Approaches in Risk Assessment
Santiago Radío, Marco Di Marsico, C. Bersani, et al.
EFSA Supporting Publications (2024) Vol. 21, Iss. 10
Open Access | Times Cited: 1
Page 1 - Next Page

Scroll to top