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OpenAlex Citation Counts

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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

The continuum of Drosophila embryonic development at single-cell resolution
Diego Calderon, Ronnie Blecher‐Gonen, Xingfan Huang, et al.
Science (2022) Vol. 377, Iss. 6606
Open Access | Times Cited: 71

Showing 1-25 of 71 citing articles:

A reference cell tree will serve science better than a reference cell atlas
Silvia Domcke, Jay Shendure
Cell (2023) Vol. 186, Iss. 6, pp. 1103-1114
Closed Access | Times Cited: 68
A single-cell time-lapse of mouse prenatal development from gastrula to birth
Chengxiang Qiu, Beth Martin, Ian Welsh, et al.
Nature (2024) Vol. 626, Iss. 8001, pp. 1084-1093
Open Access | Times Cited: 62
GAGE-seq concurrently profiles multiscale 3D genome organization and gene expression in single cells
Tianming Zhou, Ruochi Zhang, Deyong Jia, et al.
Nature Genetics (2024) Vol. 56, Iss. 8, pp. 1701-1711
Open Access | Times Cited: 22
Targeted design of synthetic enhancers for selected tissues in the Drosophila embryo
Bernardo P. de Almeida, Christoph Schaub, Michaela Pagani, et al.
Nature (2023) Vol. 626, Iss. 7997, pp. 207-211
Open Access | Times Cited: 41
Chromatin accessibility in the Drosophila embryo is determined by transcription factor pioneering and enhancer activation
Kaelan Brennan, Melanie Weilert, Sabrina Krueger, et al.
Developmental Cell (2023) Vol. 58, Iss. 19, pp. 1898-1916.e9
Open Access | Times Cited: 39
Construction of a 3D whole organism spatial atlas by joint modelling of multiple slices with deep neural networks
Gefei Wang, Jia Zhao, Yan Yan, et al.
Nature Machine Intelligence (2023) Vol. 5, Iss. 11, pp. 1200-1213
Open Access | Times Cited: 34
Spatiotemporal modeling of molecular holograms
Xiaojie Qiu, Daniel Y. Zhu, Yifan Lu, et al.
Cell (2024)
Open Access | Times Cited: 16
A spatially resolved multi-omic single-cell atlas of soybean development
Xuan Zhang, Ziliang Luo, Alexandre P. Marand, et al.
Cell (2024)
Open Access | Times Cited: 9
A single-cell multi-omic atlas spanning the adult rhesus macaque brain
Kenneth L. Chiou, Xingfan Huang, Martin O. Bohlen, et al.
Science Advances (2023) Vol. 9, Iss. 41
Open Access | Times Cited: 23
Tracking single-cell evolution using clock-like chromatin accessibility loci
Yu Xiao, Wan Jin, Lingao Ju, et al.
Nature Biotechnology (2024)
Open Access | Times Cited: 8
A spatially resolved multiomic single-cell atlas of soybean development
Xuan Zhang, Ziliang Luo, Alexandre P. Marand, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 7
A single-cell transcriptional timelapse of mouse embryonic development, from gastrula to pup
Chengxiang Qiu, Beth Martin, Ian Welsh, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access | Times Cited: 16
The journey of a generation: advances and promises in the study of primordial germ cell migration
Lacy J. Barton, Lorena Roa-de la Cruz, Ruth Lehmann, et al.
Development (2024) Vol. 151, Iss. 7
Open Access | Times Cited: 6
Epigenetic inheritance and gene expression regulation in early Drosophila embryos
Filippo Ciabrelli, Nazerke Atinbayeva, Attilio Pane, et al.
EMBO Reports (2024) Vol. 25, Iss. 10, pp. 4131-4152
Open Access | Times Cited: 6
Organogenetic transcriptomes of the Drosophila embryo at single cell resolution
Da Peng, Dorian Jackson, Bianca Palicha, et al.
Development (2024) Vol. 151, Iss. 2
Open Access | Times Cited: 5
Mapping the chromatin accessibility landscape of zebrafish embryogenesis at single-cell resolution by SPATAC-seq
Keyong Sun, Xin Liu, Runda Xu, et al.
Nature Cell Biology (2024) Vol. 26, Iss. 7, pp. 1187-1199
Closed Access | Times Cited: 5
scNODE : generative model for temporal single cell transcriptomic data prediction
Jiaqi Zhang, Erica Larschan, Jeremy Bigness, et al.
Bioinformatics (2024) Vol. 40, Iss. Supplement_2, pp. ii146-ii154
Open Access | Times Cited: 5
Multi-modular structure of the gene regulatory network for specification and commitment of murine T cells
Boyoung Shin, Ellen V. Rothenberg
Frontiers in Immunology (2023) Vol. 14
Open Access | Times Cited: 12
Binding profiles for 954 Drosophila and C. elegans transcription factors reveal tissue specific regulatory relationships
Michelle Kudron, Louis Gevirtzman, Alec Victorsen, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 4
Genetic Tools for Cell Lineage Tracing and Profiling Developmental Trajectories in the Skin
Jenny F. Nathans, Jessica Ayers, Jay Shendure, et al.
Journal of Investigative Dermatology (2024) Vol. 144, Iss. 5, pp. 936-949
Closed Access | Times Cited: 4
StaVia: spatially and temporally aware cartography with higher-order random walks for cell atlases
Shobana V. Stassen, Minato Kobashi, Edmund Y. Lam, et al.
Genome biology (2024) Vol. 25, Iss. 1
Open Access | Times Cited: 4
Concurrent profiling of multiscale 3D genome organization and gene expression in single mammalian cells
Tianming Zhou, Ruochi Zhang, Deyong Jia, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access | Times Cited: 11
Conservation of symmetry breaking at the level of chromatin accessibility between fly species with unrelated anterior determinants
Ezra E. Amiri, Ayşe Tenger‐Trolander, Muzi Li, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2025)
Open Access
Bridging spatial and temporal scales of developmental gene regulation
Andrés Cardona, M. M. Peixoto, Tohn Borjigin, et al.
Current Opinion in Genetics & Development (2025) Vol. 92, pp. 102328-102328
Open Access
Reducing batch effects in single cell chromatin accessibility measurements by pooled transposition with MULTI-ATAC
Daniel N. Conrad, Kiet T. Phong, Ekaterina Korotkevich, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2025)
Open Access
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