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OpenAlex Citation Counts

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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

A pile of pipelines: An overview of the bioinformatics software for metabarcoding data analyses
Ali Hakimzadeh, Alejandro Abdala Asbun, Davide Albanese, et al.
Molecular Ecology Resources (2023) Vol. 24, Iss. 5
Open Access | Times Cited: 41

Showing 1-25 of 41 citing articles:

Community‐scale models of microbiomes: Articulating metabolic modelling and metagenome sequencing
Klara Cerk, Pablo Ugalde‐Salas, Chabname Ghassemi Nedjad, et al.
Microbial Biotechnology (2024) Vol. 17, Iss. 1
Open Access | Times Cited: 7
Three steps towards comparability and standardization among molecular methods for characterizing insect communities
Elzbieta Iwaszkiewicz‐Eggebrecht, Vera Zizka, Christina Lynggaard
Philosophical Transactions of the Royal Society B Biological Sciences (2024) Vol. 379, Iss. 1904
Open Access | Times Cited: 7
A Long‐Term Ecological Research Data Set From the Marine Genetic Monitoring Program ARMS‐MBON 2018–2020
Nauras Daraghmeh, Katrina Exter, Justine Pagnier, et al.
Molecular Ecology Resources (2025)
Open Access
Metacommunity Theory and Metabarcoding Reveal the Environmental, Spatial and Biotic Drivers of Meiofaunal Communities in Sandy Beaches
Maximilian Pichler, Simon Creer, Alejandro Martínez, et al.
Molecular Ecology (2025)
Open Access
Revealing microbial consortia that interfere with grapevine downy mildew through microbiome epidemiology
Paola Fournier, Lucile Pellan, Aarti Jaswa, et al.
Environmental Microbiome (2025) Vol. 20, Iss. 1
Open Access
Comparative Analysis of Pasture Composition: DNA Metabarcoding Versus Quadrat‐Based Botanical Surveys in Experimental Grassland Plots
Hannah Vallin, Helen Hipperson, Jan Titěra, et al.
Ecology and Evolution (2025) Vol. 15, Iss. 4
Open Access
Molecular ecology of microbiomes in the wild: Common pitfalls, methodological advances and future directions
Nicholas M. Fountain‐Jones, Tatiana Giraud, Lucie Zinger, et al.
Molecular Ecology (2023) Vol. 33, Iss. 2
Open Access | Times Cited: 11
A new flow path: eDNA connecting hydrology and biology
Dawn URycki, Anish Kirtane, Rachel Aronoff, et al.
Wiley Interdisciplinary Reviews Water (2024) Vol. 11, Iss. 6
Open Access | Times Cited: 4
16S rRNA metabarcoding applied to the microbiome of insect products (novel food): a comparative analysis of three reference databases
Gabriele Spatola, Alice Giusti, Laura Gasperetti, et al.
Italian Journal of Food Safety (2025)
Open Access
A Confidence Scoring Procedure for eDNA Metabarcoding Records and Its Application to a Global Marine Fish Dataset
Andrea Polanco F., Romane Rozanski, Virginie Marques, et al.
Environmental DNA (2025) Vol. 7, Iss. 2
Open Access
BioInformatics Agent (BIA): Unleashing the Power of Large Language Models to Reshape Bioinformatics Workflow
Xin Qi, Quyu Kong, Hongyi Ji, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 3
Full-length 16S rRNA gene sequencing combined with adequate database selection improves the description of Arctic marine prokaryotic communities
Francisco Pascoal, Pedro Duarte, Philipp Assmy, et al.
Annals of Microbiology (2024) Vol. 74, Iss. 1
Open Access | Times Cited: 3
Advancing ecological assessment of the Arabian Gulf through eDNA metabarcoding: opportunities, prospects, and challenges
Thadickal V. Joydas, Seerangan Manokaran, Jayanath Gopi, et al.
Frontiers in Marine Science (2024) Vol. 11
Open Access | Times Cited: 2
A Comprehensive View of Food Microbiota: Introducing FoodMicrobionet v5
Eugenio Parente, Annamaria Ricciardi
Foods (2024) Vol. 13, Iss. 11, pp. 1689-1689
Open Access | Times Cited: 2
Transforming gastrointestinal helminth parasite identification in vertebrate hosts with metabarcoding: a systematic review
Madison L. Miller, Christopher T. Rota, Amy B. Welsh
Parasites & Vectors (2024) Vol. 17, Iss. 1
Open Access | Times Cited: 2
Metacommunity theory and metabarcoding reveal the environmental, spatial, and biotic drivers of meiofaunal communities in sandy beaches
Jan‐Niklas Macher, Maximilian Pichler, Simon Creer, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Closed Access | Times Cited: 2
New insights into biologic interpretation of bioinformatic pipelines for fish eDNA metabarcoding: A case study in Pearl River estuary
Zhuoying Li, Wencheng Zhao, Yun Jiang, et al.
Journal of Environmental Management (2024) Vol. 368, pp. 122136-122136
Closed Access | Times Cited: 2
The MIEM guidelines: Minimum information for reporting of environmental metabarcoding data
Katy E. Klymus, Jacoby Baker, Cathryn L. Abbott, et al.
Metabarcoding and Metagenomics (2024) Vol. 8
Open Access | Times Cited: 2
mbctools: A User-Friendly Metabarcoding and Cross-Platform Pipeline for Analyzing Multiple Amplicon Sequencing Data across a Large Diversity of Organisms
Christian Barnabé, Guilhem Sempéré, Vincent Manzanilla, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 1
Inventorizing marine biodiversity using eDNA data from Indonesian coral reefs: comparative high throughput analysis using different bioinformatic pipelines
Ni Kadek Dita Cahyani, Aji Wahyu Anggoro, Muhammad Danie Al Malik, et al.
Marine Biodiversity (2024) Vol. 54, Iss. 3
Closed Access | Times Cited: 1
Optimization of environmental DNA-based methods: A case study for detecting brook trout (Salvelinus fontinalis).
Erika Myler, Yoamel Milián‐García, Tzitziki Loeza‐Quintana, et al.
Authorea (Authorea) (2024)
Open Access | Times Cited: 1
Metagenomics approaches in unveiling the dynamics of Plant Growth-Promoting Microorganisms (PGPM) vis-à-vis Phytophthora sp. suppression in various crop ecological systems
N SIVAPRAKASAM, V. Sendhilvel, G. Karthikeyan, et al.
Research in Microbiology (2024) Vol. 175, Iss. 7, pp. 104217-104217
Closed Access | Times Cited: 1
Effects of soil biotic and abiotic characteristics on tree growth and aboveground herbivory during early afforestation
Konstantinos Georgopoulos, Т. Martijn Bezemer, Lisette Neeft, et al.
Applied Soil Ecology (2024) Vol. 202, pp. 105579-105579
Open Access | Times Cited: 1
A Guide to Environmental DNA Extractions for Non‐Molecular Trained Biologists, Ecologists, and Conservation Scientists
Jessica Rieder, Eliane Jemmi, Margaret E. Hunter, et al.
Environmental DNA (2024) Vol. 6, Iss. 5
Open Access | Times Cited: 1
A long-term ecological research data set from the marine genetic monitoring programme ARMS-MBON 2018-2020
Nauras Daraghmeh, Katrina Exter, Justine Pagnier, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 1
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