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OpenAlex Citation Counts

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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

Latent feature extraction with a prior-based self-attention framework for spatial transcriptomics
Zhen Li, Xiaoyang Chen, Xuegong Zhang, et al.
Genome Research (2023) Vol. 33, Iss. 10, pp. 1757-1773
Open Access | Times Cited: 22

Showing 22 citing articles:

PROST: quantitative identification of spatially variable genes and domain detection in spatial transcriptomics
Yuchen Liang, Guowei Shi, Runlin Cai, et al.
Nature Communications (2024) Vol. 15, Iss. 1
Open Access | Times Cited: 16
scCASE: accurate and interpretable enhancement for single-cell chromatin accessibility sequencing data
Songming Tang, Xuejian Cui, Rongxiang Wang, et al.
Nature Communications (2024) Vol. 15, Iss. 1
Open Access | Times Cited: 7
Attention-guided variational graph autoencoders reveal heterogeneity in spatial transcriptomics
Lixin Lei, Kaitai Han, Zijun Wang, et al.
Briefings in Bioinformatics (2024) Vol. 25, Iss. 3
Open Access | Times Cited: 7
Discrete latent embedding of single-cell chromatin accessibility sequencing data for uncovering cell heterogeneity
Xuejian Cui, Xiaoyang Chen, Zhen Li, et al.
Nature Computational Science (2024) Vol. 4, Iss. 5, pp. 346-359
Closed Access | Times Cited: 6
INSTINCT: Multi-sample integration of spatial chromatin accessibility sequencing data via stochastic domain translation
Yuyao Liu, Zhen Li, Xiaoyang Chen, et al.
Nature Communications (2025) Vol. 16, Iss. 1
Open Access
Graph neural networks for single-cell omics data: a review of approaches and applications
Shiming Li, Heyang Hua, Shengquan Chen
Briefings in Bioinformatics (2025) Vol. 26, Iss. 2
Open Access
Exploring the Latent Information in Spatial Transcriptomics Data via Multi‐View Graph Convolutional Network Based on Implicit Contrastive Learning
Sheng Ren, Xingyu Liao, F. Liu, et al.
Advanced Science (2025)
Open Access
Spatially informed graph transformers for spatially resolved transcriptomics
Xinyu Bao, Xuefeng Bai, Xiaoping Liu, et al.
Communications Biology (2025) Vol. 8, Iss. 1
Open Access
stMMR: accurate and robust spatial domain identification from spatially resolved transcriptomics with multi-modal feature representation
Daoliang Zhang, Na Yu, Wenrui Li, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 3
Accurate cell type annotation for single‐cell chromatin accessibility data via contrastive learning and reference guidance
Siyu Li, Songming Tang, Yunchang Wang, et al.
Quantitative Biology (2024) Vol. 12, Iss. 1, pp. 85-99
Open Access | Times Cited: 2
Cross-modality representation and multi-sample integration of spatially resolved omics data
Zhen Li, Xuejian Cui, Xiaoyang Chen, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 2
MVCLST: A spatial transcriptome data analysis pipeline for cell type classification based on multi-view comparative learning
Wei Peng, Zhihao Zhang, Wei Dai, et al.
Methods (2024) Vol. 232, pp. 115-128
Closed Access | Times Cited: 2
A review of recent advances in spatially resolved transcriptomics data analysis
Yue Gao, Ying-Lian Gao, Jing Jing, et al.
Neurocomputing (2024) Vol. 603, pp. 128283-128283
Closed Access | Times Cited: 1
Spatially Informed Graph Structure Learning Extracts Insights from Spatial Transcriptomics
Wan Nie, Yingying Yu, Xueying Wang, et al.
Advanced Science (2024)
Open Access | Times Cited: 1
stVAE deconvolves cell-type composition in large-scale cellular resolution spatial transcriptomics
Chen Li, Ting‐Fung Chan, Can Yang, et al.
Bioinformatics (2023) Vol. 39, Iss. 10
Open Access | Times Cited: 2
Supervised Analysis of Alternative Polyadenylation from Single-Cell and Spatial Transcriptomics Data with spvAPA
Qinglong Zhang, Liping Kang, Haoran Yang, et al.
(2024)
Closed Access
SOFisher: Reinforcement Learning-Guided Experiment Designs for Spatial Omics
Zhuo Li, Weiran Wu, Yan Cui, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Closed Access
Supervised analysis of alternative polyadenylation from single-cell and spatial transcriptomics data with spvAPA
Qinglong Zhang, Liping Kang, Haoran Yang, et al.
Briefings in Bioinformatics (2024) Vol. 26, Iss. 1
Open Access
INSTINCT: Multi-sample integration of spatial chromatin accessibility sequencing data via stochastic domain translation
Yuyao Liu, Zhen Li, Xiaoyang Chen, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access
Multi-scale feature extraction and TrasMLP encoder module for ocean HABs segmentation
Bi-Yao Wen, Gengkun Wu, Jie Xu, et al.
Ocean Engineering (2024) Vol. 311, pp. 118947-118947
Closed Access
Enhancing spatial domain detection in spatial transcriptomics with EnSDD
Hui-Sheng Li, Yuting Tan, Xiao-Fei Zhang
Communications Biology (2024) Vol. 7, Iss. 1
Open Access
stMMR: accurate and robust spatial domain identification from spatially resolved transcriptomics with multimodal feature representation
Daoliang Zhang, Na Yu, Zhiyuan Yuan, et al.
GigaScience (2024) Vol. 13
Open Access
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