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OpenAlex Citation Counts

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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

Partial alignment of multislice spatially resolved transcriptomics data
Xinhao Liu, Ron Zeira, Benjamin J. Raphael
Genome Research (2023)
Closed Access | Times Cited: 29

Showing 1-25 of 29 citing articles:

Spatial multi-omics: novel tools to study the complexity of cardiovascular diseases
Paul Kießling, Christoph Kuppe
Genome Medicine (2024) Vol. 16, Iss. 1
Open Access | Times Cited: 21
Tumour evolution and microenvironment interactions in 2D and 3D space
Chia-Kuei Mo, Jingxian Liu, Siqi Chen, et al.
Nature (2024) Vol. 634, Iss. 8036, pp. 1178-1186
Open Access | Times Cited: 16
Mapping cells through time and space with moscot
Dominik Klein, Giovanni Palla, Marius Lange, et al.
Nature (2025)
Open Access | Times Cited: 2
Spatiotemporal modeling of molecular holograms
Xiaojie Qiu, Daniel Y. Zhu, Yifan Lu, et al.
Cell (2024)
Open Access | Times Cited: 15
Benchmarking clustering, alignment, and integration methods for spatial transcriptomics
Yunfei Hu, Manfei Xie, Yikang Li, et al.
Genome biology (2024) Vol. 25, Iss. 1
Open Access | Times Cited: 10
Computational methods for alignment and integration of spatially resolved transcriptomics data
Yuyao Liu, Can Yang
Computational and Structural Biotechnology Journal (2024) Vol. 23, pp. 1094-1105
Open Access | Times Cited: 5
Mapping lineage-traced cells across time points with moslin
Marius Lange, Zoe Piran, Michal Klein, et al.
Genome biology (2024) Vol. 25, Iss. 1
Open Access | Times Cited: 5
DeST-OT: Alignment of spatiotemporal transcriptomics data
Peter Halmos, Xinhao Liu, Julian Gold, et al.
Cell Systems (2025)
Closed Access
From morphology to single-cell molecules: high-resolution 3D histology in biomedicine
Xintian Xu, Jimeng Su, Rongyi Zhu, et al.
Molecular Cancer (2025) Vol. 24, Iss. 1
Open Access
haCCA: Multi-module Integrating of spatial transcriptomes and metabolomes.
Luyu Yang, Xiaotian Shen, Jing Xu, et al.
Research Square (Research Square) (2025)
Closed Access
Computational modeling for deciphering tissue microenvironment heterogeneity from spatially resolved transcriptomics
Chuanchao Zhang, Lequn Wang, Qianqian Shi
Computational and Structural Biotechnology Journal (2024) Vol. 23, pp. 2109-2115
Open Access | Times Cited: 4
Joint imputation and deconvolution of gene expression across spatial transcriptomics platforms
Hongyu Zheng, Hirak Sarkar, Benjamin J. Raphael
bioRxiv (Cold Spring Harbor Laboratory) (2025)
Open Access
stDyer enables spatial domain clustering with dynamic graph embedding
Ke Xu, Yu Xu, Zirui Wang, et al.
Genome biology (2025) Vol. 26, Iss. 1
Open Access
Learning Latent Trajectories in Developmental Time Series with Hidden-Markov Optimal Transport
Peter Halmos, Julian Gold, Xinhao Liu, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2025)
Open Access
SANTO: a coarse-to-fine alignment and stitching method for spatial omics
Haoyang Li, Yingxin Lin, Wenjia He, et al.
Nature Communications (2024) Vol. 15, Iss. 1
Open Access | Times Cited: 3
Mapping the topography of spatial gene expression with interpretable deep learning
Uthsav Chitra, Brian J. Arnold, Hirak Sarkar, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access | Times Cited: 8
DeST-OT: Alignment of Spatiotemporal Transcriptomics Data
Peter Halmos, Xinhao Liu, Julian Gold, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 2
A single-cell 3D spatiotemporal multi-omics atlas fromDrosophilaembryogenesis to metamorphosis
Mingyue Wang, Qinan Hu, Zhencheng Tu, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 1
Graspot: A graph attention network for spatial transcriptomics data integration with optimal transport
Zizhan Gao, Kai Cao, Lin Wan
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 1
Tissue and cellular spatiotemporal dynamics in colon aging
Aidan C. Daly, Francesco Cambuli, Tarmo Äijö, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 1
stDyer enables spatial domain clustering with dynamic graph embedding
Ke Xu, Yu Xu, Zirui Wang, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 1
Graspot: a graph attention network for spatial transcriptomics data integration with optimal transport
Zizhan Gao, Kai Cao, Lin Wan
Bioinformatics (2024) Vol. 40, Iss. Supplement_2, pp. ii137-ii145
Open Access | Times Cited: 1
Inferring allele-specific copy number aberrations and tumor phylogeography from spatially resolved transcriptomics
Cong Ma, Metin Balaban, Jingxian Liu, et al.
Nature Methods (2024)
Open Access | Times Cited: 1
Image-based representation of massive spatial transcriptomics datasets
Stephan Preibisch, Michael Innerberger, Daniel León-Periñán, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2021)
Closed Access | Times Cited: 10
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