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OpenAlex Citation Counts

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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

Normalization and variance stabilization of single-cell RNA-seq data using regularized negative binomial regression
Christoph Hafemeister, Rahul Satija
bioRxiv (Cold Spring Harbor Laboratory) (2019)
Open Access | Times Cited: 207

Showing 1-25 of 207 citing articles:

Comprehensive Integration of Single-Cell Data
Tim Stuart, Andrew Butler, Paul Hoffman, et al.
Cell (2019) Vol. 177, Iss. 7, pp. 1888-1902.e21
Open Access | Times Cited: 12393
Eleven grand challenges in single-cell data science
David Lähnemann, Johannes Köster, Ewa Szczurek, et al.
Genome biology (2020) Vol. 21, Iss. 1
Open Access | Times Cited: 992
Organoid single-cell genomic atlas uncovers human-specific features of brain development
Sabina Kanton, Michael James Boyle, Zhisong He, et al.
Nature (2019) Vol. 574, Iss. 7778, pp. 418-422
Open Access | Times Cited: 618
Proteogenomic and metabolomic characterization of human glioblastoma
Liang-Bo Wang, Alla Karpova, Marina Gritsenko, et al.
Cancer Cell (2021) Vol. 39, Iss. 4, pp. 509-528.e20
Open Access | Times Cited: 456
Feature selection and dimension reduction for single-cell RNA-Seq based on a multinomial model
F. William Townes, Stephanie C. Hicks, Martin J. Aryee, et al.
Genome biology (2019) Vol. 20, Iss. 1
Open Access | Times Cited: 412
Comprehensive analysis of single cell ATAC-seq data with SnapATAC
Rongxin Fang, Sebastian Preißl, Yang Li, et al.
Nature Communications (2021) Vol. 12, Iss. 1
Open Access | Times Cited: 338
Human Lung Stem Cell-Based Alveolospheres Provide Insights into SARS-CoV-2-Mediated Interferon Responses and Pneumocyte Dysfunction
Hiroaki Katsura, Vishwaraj Sontake, Aleksandra Tata, et al.
Cell stem cell (2020) Vol. 27, Iss. 6, pp. 890-904.e8
Open Access | Times Cited: 326
muscat detects subpopulation-specific state transitions from multi-sample multi-condition single-cell transcriptomics data
Helena L. Crowell, Charlotte Soneson, Pierre‐Luc Germain, et al.
Nature Communications (2020) Vol. 11, Iss. 1
Open Access | Times Cited: 307
A spatially restricted fibrotic niche in pulmonary fibrosis is sustained by M-CSF/M-CSFR signalling in monocyte-derived alveolar macrophages
Nikita Joshi, Satoshi Watanabe, Rohan Verma, et al.
European Respiratory Journal (2019) Vol. 55, Iss. 1, pp. 1900646-1900646
Open Access | Times Cited: 241
Gene expression and functional deficits underlie TREM2-knockout microglia responses in human models of Alzheimer’s disease
Amanda McQuade, You Jung Kang, Jonathan Hasselmann, et al.
Nature Communications (2020) Vol. 11, Iss. 1
Open Access | Times Cited: 240
TREM2 drives microglia response to amyloid-β via SYK-dependent and -independent pathways
Shoutang Wang, Raki Sudan, Vincent Peng, et al.
Cell (2022) Vol. 185, Iss. 22, pp. 4153-4169.e19
Open Access | Times Cited: 187
The single-cell eQTLGen consortium
Monique G.P. van der Wijst, DH de Vries, Hilde E. Groot, et al.
eLife (2020) Vol. 9
Open Access | Times Cited: 180
Demuxafy: improvement in droplet assignment by integrating multiple single-cell demultiplexing and doublet detection methods
Drew Neavin, Anne Senabouth, Himanshi Arora, et al.
Genome biology (2024) Vol. 25, Iss. 1
Open Access | Times Cited: 16
Single-Cell Signature Explorer for comprehensive visualization of single cell signatures across scRNA-seq datasets
Frédéric Pont, Marie Tosolini, Jean‐Jacques Fournié
Nucleic Acids Research (2019) Vol. 47, Iss. 21, pp. e133-e133
Open Access | Times Cited: 121
Single-cell RNA-sequencing of herpes simplex virus 1-infected cells connects NRF2 activation to an antiviral program
Emanuel Wyler, Vedran Franke, Jennifer Menegatti, et al.
Nature Communications (2019) Vol. 10, Iss. 1
Open Access | Times Cited: 121
Type I Interferon Signaling Disrupts the Hepatic Urea Cycle and Alters Systemic Metabolism to Suppress T Cell Function
Alexander Lercher, Anannya Bhattacharya, Alexandra Popa, et al.
Immunity (2019) Vol. 51, Iss. 6, pp. 1074-1087.e9
Open Access | Times Cited: 93
Schizophrenia is defined by cell-specific neuropathology and multiple neurodevelopmental mechanisms in patient-derived cerebral organoids
Michael Notaras, Aiman Lodhi, Friederike Dündar, et al.
Molecular Psychiatry (2021) Vol. 27, Iss. 3, pp. 1416-1434
Open Access | Times Cited: 88
A single-cell atlas of human teeth
Pierfrancesco Pagella, Laura De Vargas Roditi, Bernd Stadlinger, et al.
iScience (2021) Vol. 24, Iss. 5, pp. 102405-102405
Open Access | Times Cited: 84
Fast and Accurate Clustering of Single Cell Epigenomes Reveals Cis-Regulatory Elements in Rare Cell Types
Rongxin Fang, Sebastian Preißl, Xiaomeng Hou, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2019), pp. 615179
Open Access | Times Cited: 82
Revealing dynamics of gene expression variability in cell state space
Dominic Grün
Nature Methods (2019) Vol. 17, Iss. 1, pp. 45-49
Open Access | Times Cited: 80
Colon stroma mediates an inflammation-driven fibroblastic response controlling matrix remodeling and healing
Guadalupe J. Jasso, Alok Jaiswal, Mukund Varma, et al.
PLoS Biology (2022) Vol. 20, Iss. 1, pp. e3001532-e3001532
Open Access | Times Cited: 59
Single-cell transcriptomic Atlas of mouse cochlear aging
Guoqiang Sun, Yandong Zheng, Xiaolong Fu, et al.
Protein & Cell (2022)
Open Access | Times Cited: 44
Cell-type specific changes in PKC-delta neurons of the central amygdala during alcohol withdrawal
Geoffrey A. Dilly, Cory W. Kittleman, Tony M. Kerr, et al.
Translational Psychiatry (2022) Vol. 12, Iss. 1
Open Access | Times Cited: 35
Targeting Immune-Fibroblast Crosstalk in Myocardial Infarction and Cardiac Fibrosis
Kory J. Lavine, Junedh M. Amrute, Xin Luo, et al.
Research Square (Research Square) (2023)
Open Access | Times Cited: 20
Prolonged exposure to lung-derived cytokines is associated with activation of microglia in patients with COVID-19
Rogan A. Grant, Taylor A. Poor, Lango Sichizya, et al.
JCI Insight (2024)
Open Access | Times Cited: 11
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