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OpenAlex Citation Counts

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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

Sequence modeling and design from molecular to genome scale with Evo
Éric Nguyen, Michael Poli, Matthew G. Durrant, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 50

Showing 1-25 of 50 citing articles:

Design of highly functional genome editors by modeling the universe of CRISPR-Cas sequences
Jeffrey A. Ruffolo, Stephen Nayfach, Joseph P. Gallagher, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 26
Evaluating the representational power of pre-trained DNA language models for regulatory genomics
Ziqi Tang, Nikunj V. Somia, Yiyang Yu, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 11
Democratizing protein language models with parameter-efficient fine-tuning
Samuel Sledzieski, Meghana Kshirsagar, Minkyung Baek, et al.
Proceedings of the National Academy of Sciences (2024) Vol. 121, Iss. 26
Open Access | Times Cited: 10
Language models for biological research: a primer
Elana P. Simon, Kyle Swanson, James Zou
Nature Methods (2024) Vol. 21, Iss. 8, pp. 1422-1429
Closed Access | Times Cited: 10
Nucleotide dependency analysis of DNA language models reveals genomic functional elements
Pedro Tomaz da Silva, Alexander Karollus, Johannes Hingerl, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 6
METAGENE-1: Metagenomic Foundation Model for Pandemic Monitoring
Ollie Liu, Sami Jaghour, Johannes Hagemann, et al.
(2025)
Open Access
Ribosomal protein phylogeography offers quantitative insights into the efficacy of genome-resolved surveys of microbial communities
Matthew S. Schechter, Florian Trigodet, Iva Veseli, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2025)
Open Access
Phyla: Towards a Foundation Model for Phylogenetic Inference
Andrew Shen, Yasha Ektefaie, Lakhmi C. Jain, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2025)
Open Access
Responsible AI in biotechnology: balancing discovery, innovation and biosecurity risks
Nicole E. Wheeler
Frontiers in Bioengineering and Biotechnology (2025) Vol. 13
Open Access
‘ChatGPT for CRISPR’ creates new gene-editing tools
Ewen Callaway
Nature (2024) Vol. 629, Iss. 8011, pp. 272-272
Closed Access | Times Cited: 5
Cross-species plant genomes modeling at single nucleotide resolution using a pre-trained DNA language model
Jingjing Zhai, Aaron Gokaslan, Yair Schiff, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 5
ProteinCLIP: enhancing protein language models with natural language
Kevin Wu, Howard F. Chang, James Zou
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 4
The OMG dataset: An Open MetaGenomic corpus for mixed-modality genomic language modeling
Andre Cornman, Jacob West-Roberts, Antônio Pedro Camargo, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 4
Searching for the optimal microbial factory: high-throughput biosensors and analytical techniques for screening small molecules
Eloise O’Connor, Jason Micklefield, Yizhi Cai
Current Opinion in Biotechnology (2024) Vol. 87, pp. 103125-103125
Open Access | Times Cited: 3
Training Compute-Optimal Protein Language Models
Xingyi Cheng, Bo Chen, Pan Li, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 3
Synthetic genomes unveil the effects of synonymous recoding
Ákos Nyerges, Anush Chiappino-Pepe, Bogdan Budnik, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 3
RNA language models predict mutations that improve RNA function
Yekaterina Shulgina, Marena Trinidad, Conner J. Langeberg, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 2
LucaOne: Generalized Biological Foundation Model with Unified Nucleic Acid and Protein Language
Yong He, Pan Fang, Yongtao Shan, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 2
ProtMamba: a homology-aware but alignment-free protein state space model
Damiano Sgarbossa, Cyril Malbranke, Anne‐Florence Bitbol
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 2
CD-GPT: A Biological Foundation Model Bridging the Gap between Molecular Sequences Through Central Dogma
Xiao Yun Zhu, Chenchen Qin, Fang Wang, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Closed Access | Times Cited: 2
Diverse Genomic Embedding Benchmark for functional evaluation across the tree of life
Jacob West-Roberts, Joshua Kravitz, Nishant Jha, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Closed Access | Times Cited: 2
AI and biosecurity: The need for governance
Doni Bloomfield, Jaspreet Pannu, Alex Zhu, et al.
Science (2024) Vol. 385, Iss. 6711, pp. 831-833
Closed Access | Times Cited: 2
Transformer model generated bacteriophage genomes are compositionally distinct from natural sequences
Jeremy Ratcliff
NAR Genomics and Bioinformatics (2024) Vol. 6, Iss. 3
Open Access | Times Cited: 2
The Nobel Prize in Chemistry: past, present, and future of AI in biology
Luciano A. Abriata
Communications Biology (2024) Vol. 7, Iss. 1
Open Access | Times Cited: 2
MethylGPT: a foundation model for the DNA methylome
Kejun Ying, Jinyeop Song, Haotian Cui, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 2
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