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OpenAlex Citation Counts

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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

Mapping cells through time and space with moscot
Dominik Klein, Giovanni Palla, Marius Lange, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access | Times Cited: 51

Showing 1-25 of 51 citing articles:

CellRank 2: unified fate mapping in multiview single-cell data
Philipp Weiler, Marius Lange, Michal Klein, et al.
Nature Methods (2024) Vol. 21, Iss. 7, pp. 1196-1205
Open Access | Times Cited: 30
Spatiotemporal omics for biology and medicine
Longqi Liu, Ao Chen, Yuxiang Li, et al.
Cell (2024) Vol. 187, Iss. 17, pp. 4488-4519
Closed Access | Times Cited: 23
An integrated transcriptomic cell atlas of human neural organoids
Zhisong He, Leander Dony, Jonas Simon Fleck, et al.
Nature (2024) Vol. 635, Iss. 8039, pp. 690-698
Open Access | Times Cited: 20
Spatiotemporal modeling of molecular holograms
Xiaojie Qiu, Daniel Y. Zhu, Yifan Lu, et al.
Cell (2024)
Open Access | Times Cited: 15
Cooperative integration of spatially resolved multi-omics data with COSMOS
Yuansheng Zhou, Xue Xiao, Lei Dong, et al.
Nature Communications (2025) Vol. 16, Iss. 1
Open Access | Times Cited: 1
Unified fate mapping in multiview single-cell data
Philipp Weiler, Marius Lange, Michal Klein, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access | Times Cited: 17
Nicheformer: A Foundation Model for Single-Cell and Spatial Omics
Anna C. Schaar, Alejandro Tejada-Lapuerta, Giovanni Palla, et al.
(2024)
Open Access | Times Cited: 7
Quantifying cell-state densities in single-cell phenotypic landscapes using Mellon
Dominik J. Otto, C. Diana Jordan, Brennan Dury, et al.
Nature Methods (2024) Vol. 21, Iss. 7, pp. 1185-1195
Closed Access | Times Cited: 7
Nicheformer: a foundation model for single-cell and spatial omics
Anna C. Schaar, Alejandro Tejada-Lapuerta, Giovanni Palla, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 6
An integrated transcriptomic cell atlas of human neural organoids
Zhisong He, Leander Dony, Jonas Simon Fleck, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access | Times Cited: 13
Machine learning integrative approaches to advance computational immunology
Fabiola Curion, Fabian J. Theis
Genome Medicine (2024) Vol. 16, Iss. 1
Open Access | Times Cited: 5
Mapping lineage-traced cells across time points with moslin
Marius Lange, Zoe Piran, Michal Klein, et al.
Genome biology (2024) Vol. 25, Iss. 1
Open Access | Times Cited: 5
DeST-OT: Alignment of spatiotemporal transcriptomics data
Peter Halmos, Xinhao Liu, Julian Gold, et al.
Cell Systems (2025)
Closed Access
Single-cell multiome and spatial profiling reveals pancreas cell type-specific gene regulatory programs driving type 1 diabetes progression
Rebecca L. Melton, Sara Jiménez, Weston S. Elison, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2025)
Open Access
Learning Latent Trajectories in Developmental Time Series with Hidden-Markov Optimal Transport
Peter Halmos, Julian Gold, Xinhao Liu, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2025)
Open Access
Dynamic modeling, optimization, and deep learning for high-dimensional complex biological data
Qi Jiang, Lin Wan
Scientia Sinica Mathematica (2025)
Closed Access
DOT: a flexible multi-objective optimization framework for transferring features across single-cell and spatial omics
Arezou Rahimi, Luís A. Vale-Silva, Maria Fälth Savitski, et al.
Nature Communications (2024) Vol. 15, Iss. 1
Open Access | Times Cited: 4
Optimal transport for single-cell and spatial omics
Charlotte Bunne, Geoffrey Schiebinger, Andreas Krause, et al.
Nature Reviews Methods Primers (2024) Vol. 4, Iss. 1
Closed Access | Times Cited: 4
Spatial omics advances for in situ RNA biology
Jingyi Ren, Shuchen Luo, Hailing Shi, et al.
Molecular Cell (2024)
Closed Access | Times Cited: 4
Inferring cell trajectories of spatial transcriptomics via optimal transport analysis
Xunan Shen, Lulu Zuo, Zhongfei Ye, et al.
Cell Systems (2025), pp. 101194-101194
Open Access
Interpretable Data Integration for Single Cell and Spatial Multi-Omics
Chenghui Yang, Zhentao He, Qing Nie, et al.
(2025)
Closed Access
A multimodal cross-species comparison of pancreas development
Heiko Lickert, Kaiyuan Yang, Hannah Spitzer, et al.
Research Square (Research Square) (2024)
Open Access | Times Cited: 3
scConfluence: single-cell diagonal integration with regularized Inverse Optimal Transport on weakly connected features
Jules Samaran, Gabriel Peyré, Laura Cantini
Nature Communications (2024) Vol. 15, Iss. 1
Open Access | Times Cited: 3
Mapping the topography of spatial gene expression with interpretable deep learning
Uthsav Chitra, Brian J. Arnold, Hirak Sarkar, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access | Times Cited: 8
DeST-OT: Alignment of Spatiotemporal Transcriptomics Data
Peter Halmos, Xinhao Liu, Julian Gold, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 2
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