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OpenAlex Citation Counts

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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

SpatialData: an open and universal data framework for spatial omics
Luca Marconato, Giovanni Palla, Kevin A. Yamauchi, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access | Times Cited: 23

Showing 23 citing articles:

OME-Zarr: a cloud-optimized bioimaging file format with international community support
Josh Moore, Daniela Basurto-Lozada, Sébastien Besson, et al.
Histochemistry and Cell Biology (2023) Vol. 160, Iss. 3, pp. 223-251
Open Access | Times Cited: 63
Multiplex protein imaging in tumour biology
Natalie de Souza, Shan Zhao, Bernd Bodenmiller
Nature reviews. Cancer (2024) Vol. 24, Iss. 3, pp. 171-191
Closed Access | Times Cited: 26
Multimodal bioimaging across disciplines and scales: challenges, opportunities and breaking down barriers
Johanna Bischof, Georgina Fletcher, Paul Verkade, et al.
npj Imaging (2024) Vol. 2, Iss. 1
Open Access | Times Cited: 8
Enablers and challenges of spatial omics, a melting pot of technologies
Theodore Alexandrov, Julio Sáez-Rodríguez, Sinem K. Saka
Molecular Systems Biology (2023) Vol. 19, Iss. 11
Open Access | Times Cited: 17
Vitessce: integrative visualization of multimodal and spatially-resolved single-cell data
Mark S. Keller, Ilan Gold, Chuck McCallum, et al.
(2021)
Open Access | Times Cited: 35
Giotto Suite: a multi-scale and technology-agnostic spatial multi-omics analysis ecosystem
Jiaji George Chen, Joselyn Cristina Chávez-Fuentes, Matthew O’Brien, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access | Times Cited: 13
GraphCompass: Spatial metrics for differential analyses of cell organization across conditions
Mayar Ali, Merel Kuijs, Soroor Hediyeh-zadeh, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 5
SEraster: a rasterization preprocessing framework for scalable spatial omics data analysis
Gohta Aihara, Kalen Clifton, Mayling Chen, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 5
Towards the Next Generation of Data‐Driven Therapeutics Using Spatially Resolved Single‐Cell Technologies and Generative AI
Avital Rodov, Hosna Baniadam, Robert Zeiser, et al.
European Journal of Immunology (2025) Vol. 55, Iss. 2
Open Access
Charting the tumor microenvironment with spatial profiling technologies
Mattia Toninelli, Grazisa Rossetti, Massimiliano Pagani
Trends in cancer (2023) Vol. 9, Iss. 12, pp. 1085-1096
Open Access | Times Cited: 10
WebAtlas pipeline for integrated single cell and spatial transcriptomic data
Tong Li, Dave Horsfall, Daniela Basurto-Lozada, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Closed Access | Times Cited: 9
A standard for sharing spatial transcriptomics data
Kayla Jackson, Lior Pachter
Cell Genomics (2023) Vol. 3, Iss. 8, pp. 100374-100374
Open Access | Times Cited: 9
SPACEc: A Streamlined, Interactive Python Workflow for Multiplexed Image Processing and Analysis
Yuqi Tan, Tim N. Kempchen, Martin Becker, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Closed Access | Times Cited: 3
Predictive analyses of regulatory sequences with EUGENe
Adam Klie, David Laub, James Talwar, et al.
Nature Computational Science (2023) Vol. 3, Iss. 11, pp. 946-956
Open Access | Times Cited: 7
Harmonizing the Generation and Pre-publication Stewardship of FAIR Image Data
Nikki Bialy, Frank Alber, Brenda Andrews, et al.
arXiv (Cornell University) (2024)
Open Access | Times Cited: 2
A perspective on FAIR quality control in multiplexed imaging data processing
Wouter-Michiel Vierdag, Sinem K. Saka
Frontiers in Bioinformatics (2024) Vol. 4
Open Access | Times Cited: 2
Computational cell–cell interaction technologies drive mechanistic and biomarker discovery in the tumor microenvironment
Avery Pong, Clarence K. Mah, G Yeo, et al.
Current Opinion in Biotechnology (2023) Vol. 85, pp. 103048-103048
Closed Access | Times Cited: 5
VoltRon: A Spatial Omics Analysis Platform for Multi-Resolution and Multi-omics Integration using Image Registration
Artür Manukyan, Ella Bahry, Emanuel Wyler, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access | Times Cited: 4
Analysis-ready VCF at Biobank scale using Zarr
Eric Czech, Timothy R. Millar, Will Tyler, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 1
Sopa: a technology-invariant pipeline for analyses of image-based spatial-omics
Quentin Blampey, Kevin Mulder, Charles‐Antoine Dutertre, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access | Times Cited: 2
Integration of spatially resolved transcriptomics into pathological research: Opportunities and challenges
Johannes Wirth
Trillium Pathology (2024) Vol. 3, Iss. 1, pp. 32-36
Closed Access
mxfda: A comprehensive toolkit for functional data analysis of single-cell spatial data
Julia Wrobel, Alex C. Soupir, Mitchell Hayes, et al.
Bioinformatics Advances (2024) Vol. 4, Iss. 1
Open Access
Spatially resolved multiomics: data analysis from monoomics to multiomics
Changxiang Huan, Jinze Li, Yingxue Li, et al.
BME Frontiers (2024) Vol. 6
Open Access
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