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OpenAlex Citation Counts

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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

scPerturb: Harmonized Single-Cell Perturbation Data
Stefan Peidli, Tessa D. Green, Ciyue Shen, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2022)
Open Access | Times Cited: 15

Showing 15 citing articles:

Diverse clonal fates emerge upon drug treatment of homogeneous cancer cells
Yogesh Goyal, Gianna T. Busch, Maalavika Pillai, et al.
Nature (2023) Vol. 620, Iss. 7974, pp. 651-659
Open Access | Times Cited: 101
Learning single-cell perturbation responses using neural optimal transport
Charlotte Bunne, Stefan G. Stark, Gabriele Gut, et al.
Nature Methods (2023) Vol. 20, Iss. 11, pp. 1759-1768
Open Access | Times Cited: 49
Statistical inference with a manifold-constrained RNA velocity model uncovers cell cycle speed modulations
Alex R. Lederer, Maxine Leonardi, Lorenzo Figà Talamanca, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 6
AUC-PR is a More Informative Metric for Assessing the Biological Relevance of In Silico Cellular Perturbation Prediction Models
Hongxu Zhu, Amir Asiaee, Leila Azinfar, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2025)
Open Access
Pooled Genome-Scale CRISPR Screens in Single Cells
Daniel Schraivogel, Lars M. Steinmetz, Leopold Parts
Annual Review of Genetics (2023) Vol. 57, Iss. 1, pp. 223-244
Open Access | Times Cited: 10
High-resolution genome-wide mapping of chromosome-arm-scale truncations induced by CRISPR-Cas9 editing
Nathan H. Lazar, Safiye Çelik, Lu Chen, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access | Times Cited: 8
Application of perturbation gene expression profiles in drug discovery—From mechanism of action to quantitative modelling
Bence Szalai, Dániel V. Veres
Frontiers in Systems Biology (2023) Vol. 3
Open Access | Times Cited: 6
Discovering Root Causal Genes with High Throughput Perturbations
Eric V. Strobl, Eric R. Gamazon
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 1
Multifaceted Representation of Genes via Deep Learning of Gene Expression Networks
Zheng Su, Mingyan Fang, Andrei Smolnikov, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 1
SCREEN: predicting single-cell gene expression perturbation responses via optimal transport
Haixin Wang, Yunhan Wang, Qun Jiang, et al.
Frontiers of Computer Science (2024) Vol. 18, Iss. 3
Closed Access | Times Cited: 1
Representing and extracting knowledge from single-cell data
Ionut Sebastian Mihai, Sarang Chafle, Johan Henriksson
Biophysical Reviews (2023) Vol. 16, Iss. 1, pp. 29-56
Open Access | Times Cited: 4
Optimal distance metrics for single-cell RNA-seq populations
Yuge Ji, Tessa D. Green, Stefan Peidli, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access | Times Cited: 3
Modeling interpretable correspondence between cell state and perturbation response with CellCap
Yang Xu, Stephen M. Fleming, Matthew Tegtmeyer, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access
PrePR-CT: Predicting Perturbation Responses in Unseen Cell Types Using Cell-Type-Specific Graphs
Reem Alsulami, Robert Lehmann, Sumeer Ahmad Khan, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access
scperturbR: E-Statistics for Seurat Objects

(2023)
Closed Access
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