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OpenAlex Citation Counts

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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

BioImage Model Zoo: A Community-Driven Resource for Accessible Deep Learning in BioImage Analysis
Wei Ouyang, Fynn Beuttenmueller, Estibaliz Gómez‐de‐Mariscal, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2022)
Open Access | Times Cited: 62

Showing 1-25 of 62 citing articles:

Cellpose 2.0: how to train your own model
Marius Pachitariu, Carsen Stringer
Nature Methods (2022) Vol. 19, Iss. 12, pp. 1634-1641
Open Access | Times Cited: 682
OME-Zarr: a cloud-optimized bioimaging file format with international community support
Josh Moore, Daniela Basurto-Lozada, Sébastien Besson, et al.
Histochemistry and Cell Biology (2023) Vol. 160, Iss. 3, pp. 223-251
Open Access | Times Cited: 61
Live-cell imaging powered by computation
Hari Shroff, Ilaria Testa, Florian Jug, et al.
Nature Reviews Molecular Cell Biology (2024) Vol. 25, Iss. 6, pp. 443-463
Closed Access | Times Cited: 23
Microfluidic high-throughput 3D cell culture
Jihoon Ko, Dohyun Park, Jungseub Lee, et al.
Nature Reviews Bioengineering (2024) Vol. 2, Iss. 6, pp. 453-469
Closed Access | Times Cited: 21
DeepBacs for multi-task bacterial image analysis using open-source deep learning approaches
Christoph Spahn, Estibaliz Gómez‐de‐Mariscal, Romain F. Laine, et al.
Communications Biology (2022) Vol. 5, Iss. 1
Open Access | Times Cited: 63
Community-developed checklists for publishing images and image analyses
Christopher Schmied, Michael S. Nelson, Sergiy Avilov, et al.
Nature Methods (2023) Vol. 21, Iss. 2, pp. 170-181
Open Access | Times Cited: 37
Live-cell imaging in the deep learning era
Joanna W. Pylvänäinen, Estibaliz Gómez‐de‐Mariscal, Ricardo Henriques, et al.
Current Opinion in Cell Biology (2023) Vol. 85, pp. 102271-102271
Open Access | Times Cited: 24
Harnessing artificial intelligence to reduce phototoxicity in live imaging
Estibaliz Gómez‐de‐Mariscal, Mario Del Rosario, Joanna W. Pylvänäinen, et al.
Journal of Cell Science (2024) Vol. 137, Iss. 3
Open Access | Times Cited: 7
Modular segmentation, spatial analysis and visualization of volume electron microscopy datasets
Andreas Müller, Deborah Schmidt, Jan Philipp Albrecht, et al.
Nature Protocols (2024) Vol. 19, Iss. 5, pp. 1436-1466
Closed Access | Times Cited: 6
DL4MicEverywhere: deep learning for microscopy made flexible, shareable and reproducible
Iván Hidalgo-Cenalmor, Joanna W. Pylvänäinen, Mariana Ferreira, et al.
Nature Methods (2024) Vol. 21, Iss. 6, pp. 925-927
Closed Access | Times Cited: 6
Koina: Democratizing machine learning for proteomics research
Ludwig Lautenbacher, Kevin Yang, Tobias Kockmann, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 6
Nuclear instance segmentation and tracking for preimplantation mouse embryos
Hayden Nunley, Binglun Shao, David Denberg, et al.
Development (2024) Vol. 151, Iss. 21
Open Access | Times Cited: 5
Quanty-cFOS, a Novel ImageJ/Fiji Algorithm for Automated Counting of Immunoreactive Cells in Tissue Sections
Carlo A. Beretta, Sheng Liu, Alina Stegemann, et al.
Cells (2023) Vol. 12, Iss. 5, pp. 704-704
Open Access | Times Cited: 14
Deep learning-enabled segmentation of ambiguous bioimages with deepflash2
Matthias Griebel, Dennis Segebarth, Nikolai Stein, et al.
Nature Communications (2023) Vol. 14, Iss. 1
Open Access | Times Cited: 14
From pixels to insights: Machine learning and deep learning for bioimage analysis
M Jan, Allie Spangaro, M. Lenartowicz, et al.
BioEssays (2023) Vol. 46, Iss. 2
Open Access | Times Cited: 12
Creating and troubleshooting microscopy analysis workflows: Common challenges and common solutions
Beth A. Cimini
Journal of Microscopy (2024) Vol. 295, Iss. 2, pp. 93-101
Open Access | Times Cited: 4
Large-Scale Multi-hypotheses Cell Tracking Using Ultrametric Contours Maps
Jordão Bragantini, Merlin Lange, Loïc A. Royer
Lecture notes in computer science (2024), pp. 36-54
Closed Access | Times Cited: 4
Microscopy methods for the in vivo study of nanoscale nuclear organization
Nidhi Rani Lokesh, Mark E. Pownall
Biochemical Society Transactions (2025) Vol. 53, Iss. 01
Open Access
Subcellular dynamics in unicellular parasites
Thomas Müller, Timothy Krüger, Markus Engstler
Trends in Parasitology (2025) Vol. 41, Iss. 3, pp. 222-234
Open Access
Segment Anything for Microscopy
Anwai Archit, Luca Freckmann, Sushmita Nair, et al.
Nature Methods (2025)
Open Access
Light and electron microscopy continuum-resolution imaging of 3D cell cultures
Edoardo D’Imprima, Marta G. Montero, Sylwia Gawrzak, et al.
Developmental Cell (2023) Vol. 58, Iss. 7, pp. 616-632.e6
Open Access | Times Cited: 11
Using AI in bioimage analysis to elevate the rate of scientific discovery as a community
Damian Dalle Nogare, Matthew Hartley, J.R. Deschamps, et al.
Nature Methods (2023) Vol. 20, Iss. 7, pp. 973-975
Closed Access | Times Cited: 10
Automated tracking of cell migration in phase contrast images with CellTraxx
B. Holme, Birgitte Bjørnerud, Nina Marie Pedersen, et al.
Scientific Reports (2023) Vol. 13, Iss. 1
Open Access | Times Cited: 10
BioImage.IO Chatbot: a community-driven AI assistant for integrative computational bioimaging
Wanlu Lei, Caterina Fuster-Barceló, Gabriel K. Reder, et al.
Nature Methods (2024) Vol. 21, Iss. 8, pp. 1368-1370
Closed Access | Times Cited: 3
CellProfiler plugins – An easy image analysis platform integration for containers and Python tools
Erin Weisbart, Callum Tromans‐Coia, Barbara Diaz‐Rohrer, et al.
Journal of Microscopy (2023) Vol. 296, Iss. 3, pp. 227-234
Open Access | Times Cited: 10
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