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OpenAlex Citation Counts

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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

Multigrate: single-cell multi-omic data integration
Anastasia Litinetskaya, Maiia Shulman, Fabiola Curion, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2022)
Open Access | Times Cited: 46

Showing 1-25 of 46 citing articles:

Methods and applications for single-cell and spatial multi-omics
Katy Vandereyken, Alejandro Sifrim, Bernard Thienpont, et al.
Nature Reviews Genetics (2023) Vol. 24, Iss. 8, pp. 494-515
Open Access | Times Cited: 580
Best practices for single-cell analysis across modalities
Lukas Heumos, Anna C. Schaar, Christopher Lance, et al.
Nature Reviews Genetics (2023) Vol. 24, Iss. 8, pp. 550-572
Open Access | Times Cited: 486
Biologically informed deep learning to query gene programs in single-cell atlases
Mohammad Lotfollahi, Sergei Rybakov, Karin Hrovatin, et al.
Nature Cell Biology (2023)
Open Access | Times Cited: 55
Modeling and analyzing single-cell multimodal data with deep parametric inference
Huan Hu, Zhen Feng, Hai Lin, et al.
Briefings in Bioinformatics (2023) Vol. 24, Iss. 1
Closed Access | Times Cited: 53
Mapping cells through time and space with moscot
Dominik Klein, Giovanni Palla, Marius Lange, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access | Times Cited: 51
Deep learning applications in single-cell genomics and transcriptomics data analysis
Nafiseh Erfanian, A. Ali Heydari, Adib Miraki Feriz, et al.
Biomedicine & Pharmacotherapy (2023) Vol. 165, pp. 115077-115077
Open Access | Times Cited: 51
Single-cell profiling to explore pancreatic cancer heterogeneity, plasticity and response to therapy
Stefanie Bärthel, Chiara Falcomatà, Roland Rad, et al.
Nature Cancer (2023) Vol. 4, Iss. 4, pp. 454-467
Open Access | Times Cited: 47
Mosaic integration and knowledge transfer of single-cell multimodal data with MIDAS
眞智子 平賀, Shuofeng Hu, Yaowen Chen, et al.
Nature Biotechnology (2024) Vol. 42, Iss. 10, pp. 1594-1605
Open Access | Times Cited: 22
The future of rapid and automated single-cell data analysis using reference mapping
Mohammad Lotfollahi, Yuhan Hao, Fabian J. Theis, et al.
Cell (2024) Vol. 187, Iss. 10, pp. 2343-2358
Open Access | Times Cited: 21
A multimodal graph neural network framework for cancer molecular subtype classification
Bingjun Li, Sheida Nabavi
BMC Bioinformatics (2024) Vol. 25, Iss. 1
Open Access | Times Cited: 19
Deep learning in spatially resolved transcriptomics: a comprehensive technical view
Roxana Zahedi, Mohammad Reza Eftekhariyan Ghamsari, Ahmadreza Argha, et al.
Briefings in Bioinformatics (2024) Vol. 25, Iss. 2
Open Access | Times Cited: 15
Computational Methods for Single-Cell Multi-Omics Integration and Alignment
Stefan Stanojevic, Yijun Li, Aleksandar Ristivojevic, et al.
Genomics Proteomics & Bioinformatics (2022) Vol. 20, Iss. 5, pp. 836-849
Open Access | Times Cited: 39
High-order Topology for Deep Single-cell Multi-view Fuzzy Clustering
Dayu Hu, Zhibin Dong, Ke Liang, et al.
IEEE Transactions on Fuzzy Systems (2024) Vol. 32, Iss. 8, pp. 4448-4459
Closed Access | Times Cited: 10
Single-cell omics: experimental workflow, data analyses and applications
Fengying Sun, Haoyan Li, Dongqing Sun, et al.
Science China Life Sciences (2024)
Closed Access | Times Cited: 10
Benchmarking algorithms for single-cell multi-omics prediction and integration
Yinlei Hu, Siyuan Wan, Yuanhanyu Luo, et al.
Nature Methods (2024)
Closed Access | Times Cited: 8
Deep learning-based approaches for multi-omics data integration and analysis
Jenna L. Ballard, Zexuan Wang, Wenrui Li, et al.
BioData Mining (2024) Vol. 17, Iss. 1
Open Access | Times Cited: 7
Paired single-cell multi-omics data integration with Mowgli
Geert-Jan Huizing, Ina Maria Deutschmann, Gabriel Peyré, et al.
Nature Communications (2023) Vol. 14, Iss. 1
Open Access | Times Cited: 18
Multi-task learning from multimodal single-cell omics with Matilda
Chunlei Liu, Hao Huang, Pengyi Yang
Nucleic Acids Research (2023) Vol. 51, Iss. 8, pp. e45-e45
Open Access | Times Cited: 16
Panpipes: a pipeline for multiomic single-cell and spatial transcriptomic data analysis
Fabiola Curion, Charlotte Rich-Griffin, Devika Agarwal, et al.
Genome biology (2024) Vol. 25, Iss. 1
Open Access | Times Cited: 7
multiDGD: A versatile deep generative model for multi-omics data
Viktoria Schuster, Emma Dann, Anders Krogh, et al.
Nature Communications (2024) Vol. 15, Iss. 1
Open Access | Times Cited: 6
Machine learning integrative approaches to advance computational immunology
Fabiola Curion, Fabian J. Theis
Genome Medicine (2024) Vol. 16, Iss. 1
Open Access | Times Cited: 4
Multi‐omic analysis of dysregulated pathways in triple negative breast cancer
Fatima Sajjad, Ahmer Jalal, A. H. Jalal, et al.
Asia-Pacific Journal of Clinical Oncology (2024)
Open Access | Times Cited: 3
Multi-omics regulatory network inference in the presence of missing data
Juan Henao, Michael Lauber, Manuel Azevedo, et al.
Briefings in Bioinformatics (2023) Vol. 24, Iss. 5
Open Access | Times Cited: 9
DISCERN: deep single-cell expression reconstruction for improved cell clustering and cell subtype and state detection
Fabian Hausmann, Can Ergen, Robin Khatri, et al.
Genome biology (2023) Vol. 24, Iss. 1
Open Access | Times Cited: 9
Integrating T-cell receptor and transcriptome for large-scale single-cell immune profiling analysis
Felix Drost, 洋一 岸, Lisa M. Dratva, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2021)
Open Access | Times Cited: 21
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