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OpenAlex Citation Counts

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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

Dictionary learning for integrative, multimodal, and scalable single-cell analysis
Yuhan Hao, Tim Stuart, Madeline H. Kowalski, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2022)
Open Access | Times Cited: 110

Showing 1-25 of 110 citing articles:

Best practices for single-cell analysis across modalities
Lukas Heumos, Anna C. Schaar, Christopher Lance, et al.
Nature Reviews Genetics (2023) Vol. 24, Iss. 8, pp. 550-572
Open Access | Times Cited: 506
The technological landscape and applications of single-cell multi-omics
Alev Baysoy, Zhiliang Bai, Rahul Satija, et al.
Nature Reviews Molecular Cell Biology (2023) Vol. 24, Iss. 10, pp. 695-713
Open Access | Times Cited: 446
Microfluidics-free single-cell genomics with templated emulsification
Iain C. Clark, Kristina M. Fontanez, Robert H. Meltzer, et al.
Nature Biotechnology (2023) Vol. 41, Iss. 11, pp. 1557-1566
Open Access | Times Cited: 99
VEuPathDB: the eukaryotic pathogen, vector and host bioinformatics resource center in 2023
Jorge Álvarez-Jarreta, B Kirtley Amos, Cristina Aurrecoechea, et al.
Nucleic Acids Research (2023) Vol. 52, Iss. D1, pp. D808-D816
Open Access | Times Cited: 89
CZ CELL×GENE Discover: A single-cell data platform for scalable exploration, analysis and modeling of aggregated data
Shibla Abdulla, Brian D. Aevermann, Pedro Assis, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access | Times Cited: 66
Single-cell profiling to explore pancreatic cancer heterogeneity, plasticity and response to therapy
Stefanie Bärthel, Chiara Falcomatà, Roland Rad, et al.
Nature Cancer (2023) Vol. 4, Iss. 4, pp. 454-467
Open Access | Times Cited: 49
AI-driven multi-omics integration for multi-scale predictive modeling of genotype-environment-phenotype relationships
You Wu, Lei Xie
Computational and Structural Biotechnology Journal (2025) Vol. 27, pp. 265-277
Open Access | Times Cited: 4
scPriorGraph: constructing biosemantic cell–cell graphs with prior gene set selection for cell type identification from scRNA-seq data
Xiyue Cao, Yu‐An Huang, Zhu‐Hong You, et al.
Genome biology (2024) Vol. 25, Iss. 1
Open Access | Times Cited: 9
Recent advances in isolation and physiological characterization of planktonic anaerobic ammonia-oxidizing bacteria
Yu Zhang, Zhihui Dong, Jing Lü, et al.
Bioresource Technology (2024), pp. 131919-131919
Closed Access | Times Cited: 8
Single-cell and spatial transcriptomics uncover the role of B chromosomes in driving plant invasiveness
Cui Wang, James Ord, Mengxiao Yan, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2025)
Open Access | Times Cited: 1
Lung-resident memory B cells maintain allergic IgE responses in the respiratory tract
Alexander J Nelson, Bruna K. Tatematsu, Jordan R. Beach, et al.
Immunity (2025)
Open Access | Times Cited: 1
Depth normalization for single-cell genomics count data
A. Sina Booeshaghi, Ingileif B. Hallgrímsdóttir, Ángel Gálvez-Merchán, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2022)
Open Access | Times Cited: 32
scMoMaT jointly performs single cell mosaic integration and multi-modal bio-marker detection
Ziqi Zhang, Haoran Sun, Ragunathan Mariappan, et al.
Nature Communications (2023) Vol. 14, Iss. 1
Open Access | Times Cited: 21
Single-Cell Multiomics
Emily Flynn, Ana Almonte-Loya, Gabriela K. Fragiadakis
Annual Review of Biomedical Data Science (2023) Vol. 6, Iss. 1, pp. 313-337
Open Access | Times Cited: 19
Enablers and challenges of spatial omics, a melting pot of technologies
Theodore Alexandrov, Julio Sáez-Rodríguez, Sinem K. Saka
Molecular Systems Biology (2023) Vol. 19, Iss. 11
Open Access | Times Cited: 17
Neuronal MAPT expression is mediated by long-range interactions with cis-regulatory elements
Brianne B. Rogers, Ashlyn G. Anderson, Shelby N. Lauzon, et al.
The American Journal of Human Genetics (2024) Vol. 111, Iss. 2, pp. 259-279
Open Access | Times Cited: 7
Multiplex single-cell chemical genomics reveals the kinase dependence of the response to targeted therapy
José L. McFaline‐Figueroa, Sanjay Srivatsan, Andrew J. Hill, et al.
Cell Genomics (2024) Vol. 4, Iss. 2, pp. 100487-100487
Open Access | Times Cited: 7
PhysMAP - interpretablein vivoneuronal cell type identification using multi-modal analysis of electrophysiological data
Eric Lee, Asım Emre Gül, Greggory Heller, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 6
PCTA, a pan-cancer cell line transcriptome atlas
Siyuan Cheng, Lin Li, Xiuping Yu
Cancer Letters (2024) Vol. 588, pp. 216808-216808
Open Access | Times Cited: 6
Integrated analysis of single-cell RNA-seq and bulk RNA-seq reveals immune suppression subtypes and establishes a novel signature for determining the prognosis in lung adenocarcinoma
Shengqiang Mao, Yilong Wang, Ningning Chao, et al.
Cellular Oncology (2024) Vol. 47, Iss. 5, pp. 1697-1713
Closed Access | Times Cited: 6
A single cell atlas of sexual development in Plasmodium falciparum
Sunil Kumar Dogga, Jesse C. Rop, Juliana Cudini, et al.
Science (2024) Vol. 384, Iss. 6695
Closed Access | Times Cited: 6
Transcriptomic and Chromatin Accessibility Analysis of the Human Macular and Peripheral Retinal Pigment Epithelium at the Single-Cell Level
Nathaniel K. Mullin, Andrew P. Voigt, Erin A. Boese, et al.
American Journal Of Pathology (2023) Vol. 193, Iss. 11, pp. 1750-1761
Open Access | Times Cited: 14
CCR5-overexpressing mesenchymal stem cells protect against experimental autoimmune uveitis: insights from single-cell transcriptome analysis
Fa Yuan, Rong Zhang, Jiani Li, et al.
Journal of Neuroinflammation (2024) Vol. 21, Iss. 1
Open Access | Times Cited: 5
Phospho-seq: Integrated, multi-modal profiling of intracellular protein dynamics in single cells
John D. Blair, Austin Hartman, Fides Zenk, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access | Times Cited: 11
Data-driven selection of analysis decisions in single-cell RNA-seq trajectory inference
Xiaoru Dong, Jack R. Leary, Chuanhao Yang, et al.
Briefings in Bioinformatics (2024) Vol. 25, Iss. 3
Open Access | Times Cited: 4
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