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OpenAlex Citation Counts

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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

High-throughput RNA isoform sequencing using programmable cDNA concatenation
Aziz Al’Khafaji, Jonathan T. Smith, Kiran Garimella, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2021)
Open Access | Times Cited: 24

Showing 24 citing articles:

Massively parallel base editing to map variant effects in human hematopoiesis
Jorge D. Martin-Rufino, Nicole Castano, Michael Pang, et al.
Cell (2023) Vol. 186, Iss. 11, pp. 2456-2474.e24
Open Access | Times Cited: 68
Genomics in the long-read sequencing era
Erwin L. van Dijk, Delphine Naquin, Kévin Gorrichon, et al.
Trends in Genetics (2023) Vol. 39, Iss. 9, pp. 649-671
Closed Access | Times Cited: 62
Advances in single-cell omics and multiomics for high-resolution molecular profiling
Jongsu Lim, Chanho Park, Minjae Kim, et al.
Experimental & Molecular Medicine (2024) Vol. 56, Iss. 3, pp. 515-526
Open Access | Times Cited: 18
Single-cell isoform analysis in human immune cells
Roger Volden, Christopher Vollmers
Genome biology (2022) Vol. 23, Iss. 1
Open Access | Times Cited: 48
High-throughput and high-accuracy single-cell RNA isoform analysis using PacBio circular consensus sequencing
Zhuoxing Shi, Zhichao Chen, Jiayong Zhong, et al.
Nature Communications (2023) Vol. 14, Iss. 1
Open Access | Times Cited: 34
Full-length mRNA sequencing resolves novel variation in 5′ UTR length for genes expressed during human CD4 T-cell activation
Cassandra Woolley, Julia H. Chariker, Eric C. Rouchka, et al.
Immunogenetics (2025) Vol. 77, Iss. 1
Open Access
Single-cell and long-read sequencing to enhance modelling of splicing and cell-fate determination
Siyuan Wu, Ulf Schmitz
Computational and Structural Biotechnology Journal (2023) Vol. 21, pp. 2373-2380
Open Access | Times Cited: 16
From words to complete phrases: insight into single-cell isoforms using short and long reads
Anoushka Joglekar, Careen Foord, Julien Jarroux, et al.
Transcription (2023) Vol. 14, Iss. 3-5, pp. 92-104
Open Access | Times Cited: 14
A single cell atlas of sexual development in Plasmodium falciparum
Sunil Kumar Dogga, Jesse C. Rop, Juliana Cudini, et al.
Science (2024) Vol. 384, Iss. 6695
Closed Access | Times Cited: 4
Decision level integration of unimodal and multimodal single cell data with scTriangulate
Guangyuan Li, Baobao Song, Harinder Singh, et al.
Nature Communications (2023) Vol. 14, Iss. 1
Open Access | Times Cited: 7
Molecular evidence of anteroposterior patterning in adult echinoderms
Laurent Formery, Paul Peluso, I. Kohnle, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access | Times Cited: 5
Comparison of Single-cell Long-read and Short-read Transcriptome Sequencing of Patient-derived Organoid Cells of ccRCC: Quality Evaluation of the MAS-ISO-seq Approach
Natalia Zajac, Qin Zhang, Anna Bratus-Neuschwander, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 1
The Assembled Genome of the Stroke-Prone Spontaneously Hypertensive Rat
Theodore S. Kalbfleisch, Nahla Hussien AbouEl Ela, Kai Li, et al.
Hypertension (2022) Vol. 80, Iss. 1, pp. 138-146
Open Access | Times Cited: 9
A single cell atlas of sexual development inPlasmodium falciparum
Sunil Kumar Dogga, Jesse C. Rop, Juliana Cudini, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access | Times Cited: 3
Pacific Biosciences Fusion and Long Isoform Pipeline for Cancer Transcriptome–Based Resolution of Isoform Complexity
Anthony R. Miller, Saranga Wijeratne, Sean McGrath, et al.
Journal of Molecular Diagnostics (2022) Vol. 24, Iss. 12, pp. 1292-1306
Open Access | Times Cited: 6
DNA read count calibration for single-molecule, long-read sequencing
Luis M. M. Soares, Terrence Hanscom, Donald E. Selby, et al.
Scientific Reports (2022) Vol. 12, Iss. 1
Open Access | Times Cited: 5
An isoform-resolution transcriptomic atlas of colorectal cancer from long-read single-cell sequencing
Zhongxiao Li, Bin Zhang, Jia Jia Chan, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access | Times Cited: 2
Low-usage splice junctions underpin immune-mediated disease risk
Omar El Garwany, Nikolaos Panousis, Andrew Knights, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access | Times Cited: 2
An isoform-resolution transcriptomic atlas of colorectal cancer from long-read single-cell sequencing
Zhongxiao Li, Bin Zhang, Jia Jia Chan, et al.
Cell Genomics (2024) Vol. 4, Iss. 9, pp. 100641-100641
Open Access
Defining protein variant functions using high-complexity mutagenesis libraries and enhanced mutant detection software ASMv1.0
Xiaoping Yang, Andrew L. Hong, Ted Sharpe, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2021)
Open Access | Times Cited: 5
FLAIRR-seq: A novel method for single molecule resolution of near full-length immunoglobulin heavy chain repertoires
Easton E. Ford, David Tieri, Oscar L. Rodriguez, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2022)
Open Access | Times Cited: 1
Illumina But With Nanopore: Sequencing Illumina libraries at high accuracy on the ONT MinION using R2C2
Alexander Zee, Dori Z.Q. Deng, Matthew S. Adams, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2021)
Open Access | Times Cited: 1
Single-cell full-length isoform sequencing reveals an abundance of 3’ prime partial transcripts in maternally inherited RNAs
Chuan‐Le Xiao, Chaoyang Wang, Zhuoxing Shi, et al.
Research Square (Research Square) (2022)
Open Access
Sensitive multimodal profiling of native DNA by transposase-mediated single-molecule sequencing
Arjun S. Nanda, Ke Wu, Sivakanthan Kasinathan, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2022)
Open Access
scTriangulate, a game-theory based framework for optimal solutions of uni- and multimodal single-cell data
Guangyuan Li, Baobao Song, Harinder Singh, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2021)
Open Access
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