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OpenAlex Citation Counts

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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

Reconstruction of a catalogue of genome-scale metabolic models with enzymatic constraints using GECKO 2.0
Iván Domenzain, Benjamín J. Sánchez, Mihail Anton, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2021)
Open Access | Times Cited: 24

Showing 24 citing articles:

Deep learning-based kcat prediction enables improved enzyme-constrained model reconstruction
Feiran Li, Le Yuan, Hongzhong Lu, et al.
Nature Catalysis (2022) Vol. 5, Iss. 8, pp. 662-672
Open Access | Times Cited: 214
Adaptations in metabolism and protein translation give rise to the Crabtree effect in yeast
Carl Malina, Rosemary Yu, Johan Björkeroth, et al.
Proceedings of the National Academy of Sciences (2021) Vol. 118, Iss. 51
Open Access | Times Cited: 64
ECMpy, a Simplified Workflow for Constructing Enzymatic Constrained Metabolic Network Model
Zhitao Mao, Xin Zhao, Xue Yang, et al.
Biomolecules (2022) Vol. 12, Iss. 1, pp. 65-65
Open Access | Times Cited: 29
Metabolic engineering of human gut microbiome: Recent developments and future perspectives
Peishun Li, Stefan Roos, Hao Luo, et al.
Metabolic Engineering (2023) Vol. 79, pp. 1-13
Open Access | Times Cited: 15
Building blocks needed for mechanistic modeling of bioprocesses: A critical review based on protein production by CHO cells
Yusmel González-Hernández, Patrick Perré
Metabolic Engineering Communications (2024) Vol. 18, pp. e00232-e00232
Open Access | Times Cited: 5
Multiscale models quantifying yeast physiology: towards a whole-cell model
Hongzhong Lu, Eduard J. Kerkhoven, Jens Nielsen
Trends in biotechnology (2021) Vol. 40, Iss. 3, pp. 291-305
Closed Access | Times Cited: 28
Advances in constraint-based models: methods for improved predictive power based on resource allocation constraints
Eduard J. Kerkhoven
Current Opinion in Microbiology (2022) Vol. 68, pp. 102168-102168
Open Access | Times Cited: 20
Computational biology predicts metabolic engineering targets for increased production of 102 valuable chemicals in yeast
Iván Domenzain, Yao Lü, Junling Shi, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access | Times Cited: 7
Enzyme-constrained metabolic model and in silico metabolic engineering of Clostridium ljungdahlii for the development of sustainable production processes
Antonio Caivano, Wouter van Winden, Giuliano Dragone, et al.
Computational and Structural Biotechnology Journal (2023) Vol. 21, pp. 4634-4646
Open Access | Times Cited: 7
Protein Abundance Prediction Through Machine Learning Methods
Maurício Alexander de Moura Ferreira, Rafaela Zandonade Ventorim, Eduardo Luís Menezes de Almeida, et al.
Journal of Molecular Biology (2021) Vol. 433, Iss. 22, pp. 167267-167267
Open Access | Times Cited: 18
Using resource constraints derived from genomic and proteomic data in metabolic network models
Kobe De Becker, Niccolò Totis, Kristel Bernaerts, et al.
Current Opinion in Systems Biology (2021) Vol. 29, pp. 100400-100400
Open Access | Times Cited: 9
Metabolic collaboration between cells in the tumor microenvironment has a negligible effect on tumor growth
Johan Gustafsson, Fariba Roshanzamir, Anders Hagnestål, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2022)
Open Access | Times Cited: 6
Ten Quick Tips for Accurate Reconstruction of Prokaryotic and Eukaryotic Genome-Scale Metabolic Models
Gabriela Canto-Encalada, Jenna L. Armstrong, Carlos Focil-Espinosa, et al.
(2023)
Open Access | Times Cited: 2
Model-driven evaluation of microbial physiology: insights from protein allocation
Maurício Alexander de Moura Ferreira
(2024)
Open Access
Resource Allocation in Mammalian Systems
Hratch Baghdassarian, Nathan E. Lewis
(2023)
Open Access | Times Cited: 1
Data integration across conditions improves turnover number estimates and metabolic predictions
Philipp Wendering, Marius Arend, Zahra Razaghi-Moghadamkashani, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2022)
Open Access | Times Cited: 2
Genome scale metabolic model combined with single molecule real-time sequencing to analyze Actinomycete chromosomal heterogeneity
Han Bin, Zonglin Li, Zhimin Li
Gene (2022) Vol. 850, pp. 146959-146959
Closed Access | Times Cited: 2
Interrogating the effect of enzyme kinetics on metabolism using differentiable constraint-based models
St. Elmo Wilken, Mathieu Besançon, Miroslav Kratochvíl, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2022)
Open Access | Times Cited: 1
Understanding the adaptive laboratory evolution of multiple stress‐resistant yeast strains by genome‐scale modeling
Handan Çetin, Zeynep Petek Çakar, Kutlu Ö. Ülgen
Yeast (2022) Vol. 39, Iss. 8, pp. 449-465
Closed Access | Times Cited: 1
Proteomics and constraint-based modelling reveal enzyme kinetic properties ofChlamydomonas reinhardtiion a genome scale
Marius Arend, David Zimmer, Rudan Xu, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2022)
Open Access | Times Cited: 1
Brain energy metabolism is optimized to minimize the cost of enzyme synthesis and transport
Johan Gustafsson, Jonathan L. Robinson, Henrik Zetterberg, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2022)
Open Access | Times Cited: 1
Computational biology predicts metabolic engineering targets for increased production of 102 valuable chemicals in yeast
Iván Domenzain, Yao Lü, Junling Shi, et al.
Research Square (Research Square) (2023)
Open Access
Engineering of Pseudomonas putida for accelerated co-utilization of glucose and cellobiose yields aerobic overproduction of pyruvate explained by an upgraded metabolic model
Dalimil Bujdoš, Barbora Popelářová, Daniel C. Volke, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2022)
Open Access
ecBSU1: A Genome-scale Enzyme-constrained Model of <em>Bacillus subtilis</em> based on the ECMpy Workflow
Ke Wu, Zhitao Mao, Yufeng Mao, et al.
(2022)
Open Access
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