Open Access Helper

OpenAlex Citation Counts

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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

Query to reference single-cell integration with transfer learning
Mohammad Lotfollahi, Mohsen Naghipourfar, Malte D. Luecken, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2020)
Open Access | Times Cited: 45

Showing 1-25 of 45 citing articles:

Integrated analysis of multimodal single-cell data
Yuhan Hao, Stephanie Hao, Erica Andersen‐Nissen, et al.
Cell (2021) Vol. 184, Iss. 13, pp. 3573-3587.e29
Open Access | Times Cited: 9985
scMC learns biological variation through the alignment of multiple single-cell genomics datasets
Lihua Zhang, Qing Nie
Genome biology (2021) Vol. 22, Iss. 1
Open Access | Times Cited: 652
Integrated analysis of multimodal single-cell data
Yuhan Hao, Stephanie Hao, Erica Andersen‐Nissen, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2020)
Open Access | Times Cited: 338
Computational principles and challenges in single-cell data integration
Ricard Argelaguet, Anna Cuomo, Oliver Stegle, et al.
Nature Biotechnology (2021) Vol. 39, Iss. 10, pp. 1202-1215
Closed Access | Times Cited: 321
Lung transplantation for patients with severe COVID-19
Ankit Bharat, Melissa Querrey, Nikolay S. Markov, et al.
Science Translational Medicine (2020) Vol. 12, Iss. 574
Open Access | Times Cited: 295
A harmonized atlas of mouse spinal cord cell types and their spatial organization
D. Russ, Ryan B. Patterson Cross, Li Li, et al.
Nature Communications (2021) Vol. 12, Iss. 1
Open Access | Times Cited: 177
Cross-tissue, single-cell stromal atlas identifies shared pathological fibroblast phenotypes in four chronic inflammatory diseases
Ilya Korsunsky, Kevin Wei, Mathilde Pohin, et al.
Med (2022) Vol. 3, Iss. 7, pp. 481-518.e14
Open Access | Times Cited: 127
Machine learning for perturbational single-cell omics
Yuge Ji, Mohammad Lotfollahi, Florian Wolf, et al.
Cell Systems (2021) Vol. 12, Iss. 6, pp. 522-537
Open Access | Times Cited: 84
Learning interpretable cellular and gene signature embeddings from single-cell transcriptomic data
Yifan Zhao, Huiyu Cai, Zuobai Zhang, et al.
Nature Communications (2021) Vol. 12, Iss. 1
Open Access | Times Cited: 68
scvi-tools: a library for deep probabilistic analysis of single-cell omics data
Adam Gayoso, Romain Lopez, Galen Xing, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2021)
Open Access | Times Cited: 67
Vision, challenges and opportunities for a Plant Cell Atlas
Jahed Ahmed, Oluwafemi Alaba, Gazala Ameen, et al.
eLife (2021) Vol. 10
Open Access | Times Cited: 64
Online single-cell data integration through projecting heterogeneous datasets into a common cell-embedding space
Lei Xiong, Tian Kang, Yuzhe Li, et al.
Nature Communications (2022) Vol. 13, Iss. 1
Open Access | Times Cited: 64
Multigrate: single-cell multi-omic data integration
Anastasia Litinetskaya, Maiia Shulman, Fabiola Curion, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2022)
Open Access | Times Cited: 46
Learning interpretable cellular responses to complex perturbations in high-throughput screens
Mohammad Lotfollahi, Anna Klimovskaia Susmelj, Carlo De Donno, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2021)
Open Access | Times Cited: 48
Toward modeling metabolic state from single-cell transcriptomics
Karin Hrovatin, David S. Fischer, Fabian J. Theis
Molecular Metabolism (2021) Vol. 57, pp. 101396-101396
Open Access | Times Cited: 40
Hierarchical progressive learning of cell identities in single-cell data
Lieke Michielsen, Marcel J. T. Reinders, Ahmed Mahfouz
Nature Communications (2021) Vol. 12, Iss. 1
Open Access | Times Cited: 38
Building the mega single-cell transcriptome ocular meta-atlas
Vinay Swamy, Temesgen Fufa, Robert B. Hufnagel, et al.
GigaScience (2021) Vol. 10, Iss. 10
Open Access | Times Cited: 35
Sfaira accelerates data and model reuse in single cell genomics
David S. Fischer, Leander Dony, Martin König, et al.
Genome biology (2021) Vol. 22, Iss. 1
Open Access | Times Cited: 28
Population-level integration of single-cell datasets enables multi-scale analysis across samples
Carlo De Donno, Soroor Hediyeh-zadeh, Marco Wagenstetter, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2022)
Open Access | Times Cited: 19
An integrated transcriptomic cell atlas of human neural organoids
Zhisong He, Leander Dony, Jonas Simon Fleck, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access | Times Cited: 11
Cross-tissue, single-cell stromal atlas identifies shared pathological fibroblast phenotypes in four chronic inflammatory diseases
Ilya Korsunsky, Kevin Wei, Mathilde Pohin, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2021)
Open Access | Times Cited: 26
Integrating T-cell receptor and transcriptome for large-scale single-cell immune profiling analysis
Felix Drost, 洋一 岸, Lisa M. Dratva, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2021)
Open Access | Times Cited: 21
Characterization of the treatment-naive immune microenvironment in melanoma with BRAF mutation
Minyu Wang, Soroor Hediyeh Zadeh, Angela Pizzolla, et al.
Journal for ImmunoTherapy of Cancer (2022) Vol. 10, Iss. 4, pp. e004095-e004095
Open Access | Times Cited: 15
scPretrain: multi-task self-supervised learning for cell-type classification
Ruiyi Zhang, Yunan Luo, Jianzhu Ma, et al.
Bioinformatics (2022) Vol. 38, Iss. 6, pp. 1607-1614
Open Access | Times Cited: 13
Efficient and precise single-cell reference atlas mapping with Symphony
Joyce B. Kang, Aparna Nathan, Fan Zhang, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2020)
Open Access | Times Cited: 14
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