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OpenAlex Citation Counts

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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

OnACID: Online Analysis of Calcium Imaging Data in Real Time*
Andrea Giovannucci, Johannes Friedrich, Matthew T. Kaufman, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2017)
Open Access | Times Cited: 56

Showing 1-25 of 56 citing articles:

CaImAn an open source tool for scalable calcium imaging data analysis
Andrea Giovannucci, Johannes Friedrich, Pat Gunn, et al.
eLife (2019) Vol. 8
Open Access | Times Cited: 839
Fast and robust active neuron segmentation in two-photon calcium imaging using spatiotemporal deep learning
Somayyeh Soltanian-Zadeh, Kaan Sahingur, Sarah Blau, et al.
Proceedings of the National Academy of Sciences (2019) Vol. 116, Iss. 17, pp. 8554-8563
Open Access | Times Cited: 113
Computational processing of neural recordings from calcium imaging data
Carsen Stringer, Marius Pachitariu
Current Opinion in Neurobiology (2018) Vol. 55, pp. 22-31
Open Access | Times Cited: 112
Natural and Artificial Intelligence: A brief introduction to the interplay between AI and neuroscience research
Tom Macpherson, Anne K. Churchland, Terry Sejnowski, et al.
Neural Networks (2021) Vol. 144, pp. 603-613
Open Access | Times Cited: 102
Analysis pipelines for calcium imaging data
Eftychios A. Pnevmatikakis
Current Opinion in Neurobiology (2019) Vol. 55, pp. 15-21
Open Access | Times Cited: 88
Neural data science: accelerating the experiment-analysis-theory cycle in large-scale neuroscience
Liam Paninski, JP Cunningham
Current Opinion in Neurobiology (2018) Vol. 50, pp. 232-241
Open Access | Times Cited: 85
Cortical Observation by Synchronous Multifocal Optical Sampling Reveals Widespread Population Encoding of Actions
Isaac Kauvar, Timothy A. Machado, Elle Yuen, et al.
Neuron (2020) Vol. 107, Iss. 2, pp. 351-367.e19
Open Access | Times Cited: 85
A deep-learning approach for online cell identification and trace extraction in functional two-photon calcium imaging
Luca Sità, Marco Brondi, Pedro Lagomarsino de Leon Roig, et al.
Nature Communications (2022) Vol. 13, Iss. 1
Open Access | Times Cited: 55
Minian, an open-source miniscope analysis pipeline
Zhe Dong, William Mau, Yu Feng, et al.
eLife (2022) Vol. 11
Open Access | Times Cited: 46
Stimulus novelty uncovers coding diversity in visual cortical circuits
Marina Garrett, Peter A. Groblewski, Alex T. Piet, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access | Times Cited: 24
Retinotectal circuitry of larval zebrafish is adapted to detection and pursuit of prey
Dominique Förster, Thomas O. Helmbrecht, Duncan S Mearns, et al.
eLife (2020) Vol. 9
Open Access | Times Cited: 68
Segmentation of neurons from fluorescence calcium recordings beyond real time
Yijun Bao, Somayyeh Soltanian-Zadeh, Sina Farsiu, et al.
Nature Machine Intelligence (2021) Vol. 3, Iss. 7, pp. 590-600
Open Access | Times Cited: 46
Progress in automating patch clamp cellular physiology
Luca Annecchino, Simon R. Schultz
Brain and Neuroscience Advances (2018) Vol. 2
Open Access | Times Cited: 50
Imaging epilepsy in larval zebrafish
D.R.W. Burrows, Éric Samarut, Jun Liu, et al.
European Journal of Paediatric Neurology (2020) Vol. 24, pp. 70-80
Open Access | Times Cited: 46
A Probabilistic Framework for Decoding Behavior From in vivo Calcium Imaging Data
Guillaume Etter, Frédéric Manseau, Sylvain Williams
Frontiers in Neural Circuits (2020) Vol. 14
Open Access | Times Cited: 42
Online analysis of microendoscopic 1-photon calcium imaging data streams
Johannes Friedrich, Andrea Giovannucci, Eftychios A. Pnevmatikakis
PLoS Computational Biology (2021) Vol. 17, Iss. 1, pp. e1008565-e1008565
Open Access | Times Cited: 36
VolPy: Automated and scalable analysis pipelines for voltage imaging datasets
Changjia Cai, Johannes Friedrich, Amrita Singh, et al.
PLoS Computational Biology (2021) Vol. 17, Iss. 4, pp. e1008806-e1008806
Open Access | Times Cited: 36
Penalized matrix decomposition for denoising, compression, and improved demixing of functional imaging data
E. Kelly Buchanan, Ian Kinsella, Ding Zhou, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2018)
Open Access | Times Cited: 45
FIOLA: an accelerated pipeline for fluorescence imaging online analysis
Changjia Cai, Cynthia Dong, Johannes Friedrich, et al.
Nature Methods (2023) Vol. 20, Iss. 9, pp. 1417-1425
Open Access | Times Cited: 11
Image-Based Profiling of Synaptic Connectivity in Primary Neuronal Cell Culture
Peter Verstraelen, Michiel Van Dyck, Marlies Verschuuren, et al.
Frontiers in Neuroscience (2018) Vol. 12
Open Access | Times Cited: 34
Imaging spinal cord activity in behaving animals
Nicholas A. Nelson, Xiang Wang, Daniela Cook, et al.
Experimental Neurology (2019) Vol. 320, pp. 112974-112974
Open Access | Times Cited: 30
Identifying Interpretable Latent Factors with Sparse Component Analysis
Andrew J. Zimnik, K. Cora Ames, Xinyue An, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 3
Neuroscience Cloud Analysis As a Service
Taiga Abe, Ian Kinsella, Shreya Saxena, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2020)
Open Access | Times Cited: 20
DISCo: Deep Learning, Instance Segmentation, and Correlations for Cell Segmentation in Calcium Imaging
Elke Kirschbaum, Alberto Bailoni, Fred A. Hamprecht
Lecture notes in computer science (2020), pp. 151-162
Closed Access | Times Cited: 17
CalmAn: An open source tool for scalable Calcium Imaging data Analysis
Andrea Giovannucci, Johannes Friedrich, Pat Gunn, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2018)
Open Access | Times Cited: 18
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